Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01369-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:56050933-56061562 - Strand: +


Fig. S5 for SmLINC01369-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC01369-IBu 0 0.67 2.43 -5.36 -2.51
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC01369-IBu 0.95 3.29e-08 5.08e-06
Smp_032120.1 SmLINC01369-IBu 0.90 4.65e-06 1.00e-04
Smp_098890.1 SmLINC01369-IBu 0.94 6.62e-08 8.17e-06
Smp_138080.1 SmLINC01369-IBu 0.96 5.76e-09 1.58e-06
Smp_159070.3 SmLINC01369-IBu 0.92 9.90e-07 5.30e-05
Smp_194060.1 SmLINC01369-IBu 0.93 4.13e-07 2.88e-05