Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01330-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:55183415-55184174 - Strand: +


Fig. S5 for SmLINC01330-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01330-IBu 0 1.65 1.89 5.35 8.80
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC01330-IBu 0.90 3.11e-06 1.00e-04
Smp_004420.3 SmLINC01330-IBu 0.95 4.91e-08 6.67e-06
Smp_007950.1 SmLINC01330-IBu 0.91 1.25e-06 6.26e-05
Smp_016490.2 SmLINC01330-IBu 0.94 6.82e-08 8.34e-06
Smp_028870.1 SmLINC01330-IBu 0.92 5.41e-07 3.47e-05
Smp_037720.1 SmLINC01330-IBu 0.94 1.92e-07 1.69e-05
Smp_041540.1 SmLINC01330-IBu 0.98 3.71e-11 6.26e-08
Smp_070540.1 SmLINC01330-IBu 0.97 1.71e-09 7.19e-07
Smp_085180.1 SmLINC01330-IBu 0.92 6.08e-07 3.76e-05
Smp_086450.3 SmLINC01330-IBu 0.92 8.61e-07 4.80e-05
Smp_102780.1 SmLINC01330-IBu 0.94 1.56e-07 1.47e-05
Smp_105450.1 SmLINC01330-IBu 0.97 9.53e-10 4.94e-07
Smp_105450.2 SmLINC01330-IBu 0.98 3.53e-12 1.44e-08
Smp_123880.1 SmLINC01330-IBu 0.92 9.22e-07 5.04e-05
Smp_126340.1 SmLINC01330-IBu 0.96 1.41e-08 2.87e-06
Smp_130100.1 SmLINC01330-IBu 0.96 4.17e-09 1.28e-06
Smp_130970.1 SmLINC01330-IBu 0.92 6.09e-07 3.77e-05
Smp_131410.1 SmLINC01330-IBu 0.93 4.33e-07 2.97e-05
Smp_136730.1 SmLINC01330-IBu 0.96 2.40e-09 8.96e-07
Smp_137460.1 SmLINC01330-IBu 0.98 8.55e-11 1.05e-07
Smp_137700.1 SmLINC01330-IBu 0.96 5.33e-09 1.50e-06
Smp_137720.1 SmLINC01330-IBu 0.93 4.50e-07 3.05e-05
Smp_138360.1 SmLINC01330-IBu 0.97 8.73e-10 4.67e-07
Smp_139160.1 SmLINC01330-IBu 0.97 5.40e-10 3.43e-07
Smp_139240.1 SmLINC01330-IBu 0.95 4.78e-08 6.55e-06
Smp_140720.1 SmLINC01330-IBu 0.94 1.36e-07 1.33e-05
Smp_152150.1 SmLINC01330-IBu 0.97 7.21e-10 4.13e-07
Smp_159650.1 SmLINC01330-IBu 0.93 4.04e-07 2.83e-05
Smp_162320.1 SmLINC01330-IBu 0.95 3.04e-08 4.82e-06
Smp_163700.1 SmLINC01330-IBu 0.90 2.97e-06 1.00e-04
Smp_164320.1 SmLINC01330-IBu 0.93 3.84e-07 2.73e-05
Smp_164400.1 SmLINC01330-IBu 0.98 1.05e-11 2.83e-08
Smp_170840.1 SmLINC01330-IBu 0.91 2.42e-06 9.96e-05
Smp_181070.1 SmLINC01330-IBu 0.98 2.33e-11 4.67e-08
Smp_187140.1 SmLINC01330-IBu 0.95 2.38e-08 4.09e-06
Smp_194380.1 SmLINC01330-IBu 0.92 7.63e-07 4.41e-05
Smp_194910.1 SmLINC01330-IBu 0.97 1.98e-09 7.90e-07
Smp_196830.1 SmLINC01330-IBu 0.90 3.69e-06 1.00e-04
Smp_202610.1 SmLINC01330-IBu 0.90 3.39e-06 1.00e-04
Smp_203030.1 SmLINC01330-IBu 0.95 4.77e-08 6.54e-06
Smp_205580.1 SmLINC01330-IBu 0.95 5.08e-08 6.83e-06