Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01254-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:52648541-52655875 - Strand: +


Fig. S5 for SmLINC01254-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
SmLINC01254-IBu 0 0.42 1.29 5.65 5.74
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_040970.2 0 9.27 9.42 14.46 14.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 SmLINC01254-IBu 0.97 4.14e-10 2.89e-07
Smp_040970.2 SmLINC01254-IBu 0.92 7.67e-07 4.43e-05
Smp_056360.3 SmLINC01254-IBu 0.91 1.80e-06 8.08e-05
Smp_095410.1 SmLINC01254-IBu 0.90 3.50e-06 1.00e-04
Smp_145400.1 SmLINC01254-IBu 0.90 3.49e-06 1.00e-04
Smp_172480.1 SmLINC01254-IBu 0.90 3.54e-06 1.00e-04