Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01242-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:51484470-51486549 - Strand: -


Fig. 7A S3 for SmLINC01242-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_161340.1 0 3.74 -1.93 5.74 7.30
SmLINC01242-IBu 0 8.59 8.04 9.02 10.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_072190.1 SmLINC01242-IBu 0.53 4.01e-02 9.49e-02
Smp_161340.1 SmLINC01242-IBu 0.70 3.40e-03 1.60e-02
Fig. 6A for SmLINC01242-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_135180.1 0 -2.02 -1.68 -4.72 -7.04
Smp_014260.1 0 2.10 2.61 4.63 5.12
SmLINC01242-IBu 0 8.59 8.04 9.02 10.28
Smp_160090.2 0 9.28 9.75 11.69 12.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014260.1 SmLINC01242-IBu 0.80 2.00e-04 2.70e-03
Smp_135180.1 SmLINC01242-IBu -0.80 3.00e-04 3.10e-03
Smp_160090.2 SmLINC01242-IBu 0.84 6.65e-05 1.00e-03