Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01234-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:51095918-51110232 - Strand: -


Fig. S5 for SmLINC01234-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 SmLINC01234-IBu 0.92 6.32e-07 3.87e-05
Smp_035090.2 SmLINC01234-IBu 0.96 8.79e-09 2.09e-06
Smp_109240.1 SmLINC01234-IBu 0.93 5.01e-07 3.29e-05
Smp_134410.1 SmLINC01234-IBu 0.91 1.82e-06 8.16e-05
Smp_149670.1 SmLINC01234-IBu 0.90 4.63e-06 1.00e-04
Smp_165300.1 SmLINC01234-IBu 0.90 4.85e-06 1.00e-04
Smp_192890.1 SmLINC01234-IBu 0.92 7.93e-07 4.53e-05
Smp_206200.1 SmLINC01234-IBu 0.94 1.19e-07 1.22e-05