Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01230-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:50889131-50901499 - Strand: +


Fig. 6A for SmLINC01230-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_203400.1 0 1.56 0.55 -7.76 -4.64
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_075430.1 0 1.59 -3.18 0.03 2.14
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032280.1 SmLINC01230-IBu 0.85 5.71e-05 9.00e-04
Smp_035020.1 SmLINC01230-IBu 0.81 2.00e-04 2.50e-03
Smp_038980.2 SmLINC01230-IBu 0.89 8.10e-06 2.00e-04
Smp_046690.1 SmLINC01230-IBu 0.89 8.46e-06 2.00e-04
Smp_048060.1 SmLINC01230-IBu 0.97 6.98e-10 3.74e-07
Smp_075430.1 SmLINC01230-IBu 0.82 1.00e-04 1.80e-03
Smp_084210.1 SmLINC01230-IBu 0.84 7.46e-05 1.10e-03
Smp_103140.1 SmLINC01230-IBu 0.85 4.39e-05 7.00e-04
Smp_123250.1 SmLINC01230-IBu 0.96 4.65e-09 1.28e-06
Smp_133830.1 SmLINC01230-IBu 0.90 3.21e-06 1.00e-04
Smp_140390.1 SmLINC01230-IBu 0.92 9.16e-07 4.82e-05
Smp_142120.1 SmLINC01230-IBu 0.95 2.04e-08 3.46e-06
Smp_142460.1 SmLINC01230-IBu 0.85 4.08e-05 7.00e-04
Smp_143450.1 SmLINC01230-IBu 0.86 3.24e-05 6.00e-04
Smp_145100.1 SmLINC01230-IBu 0.81 2.00e-04 2.60e-03
Smp_152770.1 SmLINC01230-IBu 0.96 4.38e-09 1.23e-06
Smp_164170.1 SmLINC01230-IBu 0.91 1.77e-06 7.71e-05
Smp_164180.1 SmLINC01230-IBu 0.96 5.16e-09 1.37e-06
Smp_171540.2 SmLINC01230-IBu 0.92 6.57e-07 3.81e-05
Smp_172460.1 SmLINC01230-IBu 0.94 1.42e-07 1.31e-05
Smp_179390.1 SmLINC01230-IBu 0.86 3.21e-05 6.00e-04
Smp_179670.1 SmLINC01230-IBu 0.91 1.80e-06 7.82e-05
Smp_187410.1 SmLINC01230-IBu 0.95 2.03e-08 3.45e-06
Smp_193650.1 SmLINC01230-IBu 0.82 1.00e-04 1.70e-03
Smp_193700.1 SmLINC01230-IBu 0.83 1.00e-04 1.50e-03
Smp_195090.1 SmLINC01230-IBu 0.88 1.42e-05 3.00e-04
Smp_200600.1 SmLINC01230-IBu 0.80 2.00e-04 2.90e-03
Smp_201230.1 SmLINC01230-IBu 0.81 2.00e-04 2.60e-03
Smp_202030.1 SmLINC01230-IBu 0.93 3.44e-07 2.42e-05
Smp_202230.1 SmLINC01230-IBu 0.97 1.72e-10 1.51e-07
Smp_202780.1 SmLINC01230-IBu 0.93 4.75e-07 3.03e-05
Smp_202840.1 SmLINC01230-IBu 0.90 2.79e-06 1.00e-04
Smp_202990.1 SmLINC01230-IBu 0.96 9.92e-09 2.12e-06
Smp_203400.1 SmLINC01230-IBu 0.82 1.00e-04 2.00e-03
Smp_203550.1 SmLINC01230-IBu 0.95 3.20e-08 4.70e-06
Smp_203820.1 SmLINC01230-IBu 0.96 8.22e-09 1.87e-06
Smp_206300.1 SmLINC01230-IBu 0.93 4.99e-07 3.14e-05
Fig. S5 for SmLINC01230-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01230-IBu 0 6.45 0.00 2.13 3.20
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140390.1 SmLINC01230-IBu 0.92 9.16e-07 5.01e-05