Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01159-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:47996334-48002226 - Strand: -


Fig. 6A for SmLINC01159-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_103610.1 0 0.81 0.51 3.03 4.34
Smp_157730.1 0 1.05 0.46 4.18 5.59
Smp_128190.1 0 1.03 2.71 4.40 6.32
SmLINC01159-IBu 0 4.56 5.43 6.43 8.01
Smp_124160.1 0 3.59 6.06 7.89 9.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_103610.1 SmLINC01159-IBu 0.81 2.00e-04 2.70e-03
Smp_124160.1 SmLINC01159-IBu 0.81 1.00e-04 2.20e-03
Smp_128190.1 SmLINC01159-IBu 0.80 2.00e-04 2.90e-03
Smp_157730.1 SmLINC01159-IBu 0.81 2.00e-04 2.40e-03