Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01155-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:47981456-47997797 - Strand: +


Fig. S5 for SmLINC01155-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC01155-IBu 0 0.17 0.53 3.76 4.22
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_160090.2 0 9.28 9.75 11.69 12.26
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC01155-IBu 0.91 2.19e-06 9.28e-05
Smp_031040.1 SmLINC01155-IBu 0.90 3.53e-06 1.00e-04
Smp_031770.10 SmLINC01155-IBu 0.91 1.79e-06 8.04e-05
Smp_033260.1 SmLINC01155-IBu 0.93 3.09e-07 2.35e-05
Smp_038870.2 SmLINC01155-IBu 0.91 1.63e-06 7.53e-05
Smp_040970.2 SmLINC01155-IBu 0.90 2.51e-06 1.00e-04
Smp_050350.3 SmLINC01155-IBu 0.91 1.36e-06 6.65e-05
Smp_052280.2 SmLINC01155-IBu 0.90 4.66e-06 1.00e-04
Smp_055340.2 SmLINC01155-IBu 0.93 4.22e-07 2.92e-05
Smp_056460.1 SmLINC01155-IBu 0.96 2.78e-09 9.85e-07
Smp_058660.1 SmLINC01155-IBu 0.95 3.98e-08 5.79e-06
Smp_079420.1 SmLINC01155-IBu 0.93 2.67e-07 2.12e-05
Smp_095410.1 SmLINC01155-IBu 0.95 2.58e-08 4.31e-06
Smp_137000.2 SmLINC01155-IBu 0.92 5.53e-07 3.52e-05
Smp_137320.1 SmLINC01155-IBu 0.92 8.89e-07 4.91e-05
Smp_141680.1 SmLINC01155-IBu 0.90 2.87e-06 1.00e-04
Smp_145400.1 SmLINC01155-IBu 0.97 4.57e-10 3.08e-07
Smp_151120.1 SmLINC01155-IBu 0.94 8.38e-08 9.59e-06
Smp_156930.1 SmLINC01155-IBu 0.90 4.73e-06 1.00e-04
Smp_160090.2 SmLINC01155-IBu 0.90 4.19e-06 1.00e-04
Smp_169670.1 SmLINC01155-IBu 0.92 8.31e-07 4.68e-05
Smp_172480.1 SmLINC01155-IBu 0.92 5.78e-07 3.63e-05
Smp_172960.1 SmLINC01155-IBu 0.96 2.70e-09 9.67e-07
Smp_192780.1 SmLINC01155-IBu 0.93 4.70e-07 3.15e-05
Smp_194860.1 SmLINC01155-IBu 0.96 5.98e-09 1.62e-06
Smp_203090.1 SmLINC01155-IBu 0.92 5.96e-07 3.71e-05
Smp_205270.1 SmLINC01155-IBu 0.92 5.94e-07 3.70e-05