Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01100-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:46696716-46699320 - Strand: -


Fig. S5 for SmLINC01100-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01100-IBu 0 0.00 0.00 7.25 4.78
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC01100-IBu 0.96 3.68e-09 1.18e-06
Smp_017610.1 SmLINC01100-IBu 0.93 3.91e-07 2.77e-05
Smp_045200.1 SmLINC01100-IBu 0.92 7.07e-07 4.18e-05
Smp_081920.1 SmLINC01100-IBu 0.94 6.37e-08 7.95e-06
Smp_082580.1 SmLINC01100-IBu 0.95 2.66e-08 4.40e-06
Smp_084270.1 SmLINC01100-IBu 0.95 4.49e-08 6.28e-06
Smp_105730.1 SmLINC01100-IBu 0.96 3.20e-09 1.08e-06
Smp_118560.1 SmLINC01100-IBu 0.95 2.16e-08 3.82e-06
Smp_123200.1 SmLINC01100-IBu 0.97 4.59e-10 3.09e-07
Smp_125210.1 SmLINC01100-IBu 0.93 3.58e-07 2.61e-05
Smp_128510.1 SmLINC01100-IBu 0.94 1.02e-07 1.09e-05
Smp_131840.1 SmLINC01100-IBu 0.95 4.82e-08 6.59e-06
Smp_134960.1 SmLINC01100-IBu 0.96 9.78e-09 2.24e-06
Smp_137320.1 SmLINC01100-IBu 0.91 2.25e-06 9.45e-05
Smp_141680.1 SmLINC01100-IBu 0.92 6.87e-07 4.10e-05
Smp_154180.1 SmLINC01100-IBu 0.94 1.60e-07 1.49e-05
Smp_160360.1 SmLINC01100-IBu 0.91 2.27e-06 9.52e-05
Smp_163940.1 SmLINC01100-IBu 0.97 1.84e-09 7.53e-07
Smp_170280.1 SmLINC01100-IBu 0.91 1.38e-06 6.73e-05
Smp_172520.1 SmLINC01100-IBu 0.96 4.90e-09 1.42e-06
Smp_175020.1 SmLINC01100-IBu 0.95 4.38e-08 6.17e-06
Smp_194960.1 SmLINC01100-IBu 0.95 1.55e-08 3.05e-06
Smp_194970.1 SmLINC01100-IBu 0.97 7.46e-10 4.22e-07
Smp_194980.1 SmLINC01100-IBu 0.98 1.11e-10 1.24e-07
Smp_197400.1 SmLINC01100-IBu 0.94 8.90e-08 9.99e-06
Smp_200750.1 SmLINC01100-IBu 0.94 8.89e-08 9.98e-06