Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01052-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:44080021-44085291 - Strand: +


Fig. S5 for SmLINC01052-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
SmLINC01052-IBu 0 7.12 3.90 9.05 9.05
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC01052-IBu 0.94 1.77e-07 1.60e-05
Smp_031040.1 SmLINC01052-IBu 0.95 2.41e-08 4.12e-06
Smp_034980.2 SmLINC01052-IBu 0.94 1.05e-07 1.12e-05
Smp_040970.2 SmLINC01052-IBu 0.91 1.46e-06 6.97e-05
Smp_058660.1 SmLINC01052-IBu 0.92 8.67e-07 4.82e-05
Smp_068270.1 SmLINC01052-IBu 0.92 6.95e-07 4.13e-05
Smp_079420.1 SmLINC01052-IBu 0.91 1.83e-06 8.19e-05
Smp_083990.2 SmLINC01052-IBu 0.90 4.19e-06 1.00e-04
Smp_137000.2 SmLINC01052-IBu 0.92 6.41e-07 3.91e-05
Smp_145400.1 SmLINC01052-IBu 0.94 1.87e-07 1.66e-05
Smp_150980.2 SmLINC01052-IBu 0.93 2.34e-07 1.94e-05
Smp_151120.1 SmLINC01052-IBu 0.92 1.11e-06 5.76e-05
Smp_159070.2 SmLINC01052-IBu 0.90 3.52e-06 1.00e-04
Smp_164550.1 SmLINC01052-IBu 0.91 2.36e-06 9.77e-05
Smp_170280.1 SmLINC01052-IBu 0.91 2.14e-06 9.14e-05
Smp_172480.1 SmLINC01052-IBu 0.94 8.03e-08 9.32e-06
Smp_172960.1 SmLINC01052-IBu 0.92 5.74e-07 3.61e-05
Smp_194860.1 SmLINC01052-IBu 0.90 2.99e-06 1.00e-04
Smp_203090.1 SmLINC01052-IBu 0.92 8.98e-07 4.94e-05
Smp_205270.1 SmLINC01052-IBu 0.93 1.98e-07 1.73e-05