Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01002-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:42162007-42169279 - Strand: +


Fig. S5 for SmLINC01002-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
SmLINC01002-IBu 0 3.82 5.68 -2.26 -2.26
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC01002-IBu 0.93 2.80e-07 2.19e-05
Smp_032120.1 SmLINC01002-IBu 0.94 9.32e-08 1.03e-05
Smp_036270.3 SmLINC01002-IBu 0.93 3.35e-07 2.49e-05
Smp_062070.1 SmLINC01002-IBu 0.91 2.42e-06 9.96e-05
Smp_063650.3 SmLINC01002-IBu 0.97 2.93e-10 2.32e-07
Smp_085110.3 SmLINC01002-IBu 0.90 3.17e-06 1.00e-04
Smp_098370.1 SmLINC01002-IBu 0.91 1.51e-06 7.13e-05
Smp_099160.4 SmLINC01002-IBu 0.90 2.64e-06 1.00e-04
Smp_159070.3 SmLINC01002-IBu 0.91 2.31e-06 9.64e-05
Smp_159150.1 SmLINC01002-IBu 0.90 4.84e-06 1.00e-04
Smp_200120.1 SmLINC01002-IBu 0.93 4.87e-07 3.22e-05