Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00998-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:42163812-42170155 - Strand: +


Fig. S5 for SmLINC00998-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_157140.1 0 9.07 10.07 10.84 11.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 SmLINC00998-IBu 0.92 1.00e-06 5.33e-05
Smp_034940.3 SmLINC00998-IBu 0.94 1.41e-07 1.37e-05
Smp_035090.2 SmLINC00998-IBu 0.95 5.97e-08 7.61e-06
Smp_055220.2 SmLINC00998-IBu 0.90 3.98e-06 1.00e-04
Smp_109240.1 SmLINC00998-IBu 0.91 1.21e-06 6.13e-05
Smp_134410.1 SmLINC00998-IBu 0.96 5.88e-09 1.60e-06
Smp_145810.2 SmLINC00998-IBu 0.93 4.28e-07 2.94e-05
Smp_149670.1 SmLINC00998-IBu 0.94 1.27e-07 1.27e-05
Smp_157140.1 SmLINC00998-IBu -0.93 3.63e-07 2.63e-05
Smp_169190.1 SmLINC00998-IBu 0.90 2.63e-06 1.00e-04
Smp_188900.1 SmLINC00998-IBu 0.90 3.74e-06 1.00e-04
Smp_195070.1 SmLINC00998-IBu 0.90 2.91e-06 1.00e-04