Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00996-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:42162108-42170155 - Strand: +


Fig. S5 for SmLINC00996-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_092880.1 0 -1.02 -1.51 -9.62 -13.17
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
SmLINC00996-IBu 0 -0.50 -1.19 -3.39 -5.19
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 SmLINC00996-IBu -0.91 2.24e-06 9.44e-05
Smp_033260.1 SmLINC00996-IBu -0.93 2.73e-07 2.16e-05
Smp_038870.2 SmLINC00996-IBu -0.91 2.43e-06 9.98e-05
Smp_050350.3 SmLINC00996-IBu -0.93 2.28e-07 1.90e-05
Smp_052280.2 SmLINC00996-IBu -0.94 6.17e-08 7.78e-06
Smp_056460.1 SmLINC00996-IBu -0.92 6.09e-07 3.77e-05
Smp_079420.1 SmLINC00996-IBu -0.92 1.10e-06 5.71e-05
Smp_086600.1 SmLINC00996-IBu 0.92 7.93e-07 4.53e-05
Smp_092880.1 SmLINC00996-IBu 0.90 2.57e-06 1.00e-04
Smp_094050.1 SmLINC00996-IBu -0.91 1.53e-06 7.20e-05
Smp_137000.2 SmLINC00996-IBu -0.91 2.41e-06 9.93e-05
Smp_155570.1 SmLINC00996-IBu -0.90 3.12e-06 1.00e-04
Smp_156930.1 SmLINC00996-IBu -0.91 1.81e-06 8.10e-05
Smp_192780.1 SmLINC00996-IBu -0.91 1.74e-06 7.90e-05
Smp_194860.1 SmLINC00996-IBu -0.91 1.38e-06 6.72e-05