Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00987-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:41460129-41469277 - Strand: +


Fig. S5 for SmLINC00987-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
SmLINC00987-IBu 0 0.00 0.00 10.68 8.42
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC00987-IBu 0.90 3.12e-06 1.00e-04
Smp_034980.2 SmLINC00987-IBu 0.91 1.54e-06 7.23e-05
Smp_068270.1 SmLINC00987-IBu 0.91 1.99e-06 8.68e-05
Smp_125200.1 SmLINC00987-IBu 0.95 4.75e-08 6.53e-06
Smp_125210.1 SmLINC00987-IBu 0.90 4.80e-06 1.00e-04
Smp_154190.1 SmLINC00987-IBu 0.93 2.02e-07 1.75e-05
Smp_160360.1 SmLINC00987-IBu 0.94 1.23e-07 1.24e-05
Smp_164550.1 SmLINC00987-IBu 0.94 1.19e-07 1.22e-05
Smp_197400.1 SmLINC00987-IBu 0.91 2.44e-06 1.00e-04