Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00986-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:41459445-41469277 - Strand: +


Fig. S5 for SmLINC00986-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00986-IBu 0 2.42 0.97 5.66 3.83
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC00986-IBu 0.96 1.10e-08 2.44e-06
Smp_014780.1 SmLINC00986-IBu 0.94 1.61e-07 1.50e-05
Smp_058140.3 SmLINC00986-IBu 0.93 3.39e-07 2.51e-05
Smp_081920.1 SmLINC00986-IBu 0.94 6.41e-08 7.99e-06
Smp_082580.1 SmLINC00986-IBu 0.93 3.65e-07 2.64e-05
Smp_105730.1 SmLINC00986-IBu 0.94 8.92e-08 1.00e-05
Smp_118560.1 SmLINC00986-IBu 0.92 1.15e-06 5.89e-05
Smp_131840.1 SmLINC00986-IBu 0.96 2.48e-09 9.14e-07
Smp_134960.1 SmLINC00986-IBu 0.90 4.35e-06 1.00e-04
Smp_150980.2 SmLINC00986-IBu 0.90 2.69e-06 1.00e-04
Smp_154180.1 SmLINC00986-IBu 0.97 5.52e-10 3.47e-07
Smp_154190.1 SmLINC00986-IBu 0.95 3.31e-08 5.11e-06
Smp_160360.1 SmLINC00986-IBu 0.92 9.15e-07 5.01e-05
Smp_164550.1 SmLINC00986-IBu 0.91 1.42e-06 6.85e-05
Smp_172520.1 SmLINC00986-IBu 0.96 1.11e-08 2.45e-06
Smp_194960.1 SmLINC00986-IBu 0.93 4.47e-07 3.03e-05
Smp_194970.1 SmLINC00986-IBu 0.93 3.43e-07 2.53e-05
Smp_194980.1 SmLINC00986-IBu 0.92 6.79e-07 4.06e-05
Smp_197400.1 SmLINC00986-IBu 0.94 6.27e-08 7.87e-06