Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00976-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:41465463-41486816 - Strand: +


Fig. S5 for SmLINC00976-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00976-IBu 0 0.00 0.00 7.91 6.84
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC00976-IBu 0.90 4.33e-06 1.00e-04
Smp_150980.2 SmLINC00976-IBu 0.90 3.26e-06 1.00e-04
Smp_154180.1 SmLINC00976-IBu 0.90 2.60e-06 1.00e-04
Smp_154190.1 SmLINC00976-IBu 0.91 1.57e-06 7.35e-05