Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00958-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:40407794-40408549 - Strand: -


Fig. S5 for SmLINC00958-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00958-IBu 0 -4.78 -4.78 2.29 4.18
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC00958-IBu 0.95 4.58e-08 6.37e-06
Smp_016490.2 SmLINC00958-IBu 0.94 1.02e-07 1.09e-05
Smp_028870.1 SmLINC00958-IBu 0.93 3.95e-07 2.79e-05
Smp_037720.1 SmLINC00958-IBu 0.92 1.18e-06 6.00e-05
Smp_050350.3 SmLINC00958-IBu 0.91 1.48e-06 7.05e-05
Smp_085180.1 SmLINC00958-IBu 0.90 2.77e-06 1.00e-04
Smp_086450.3 SmLINC00958-IBu 0.93 2.02e-07 1.75e-05
Smp_102780.1 SmLINC00958-IBu 0.93 2.19e-07 1.85e-05
Smp_105450.2 SmLINC00958-IBu 0.91 2.09e-06 9.00e-05
Smp_130100.1 SmLINC00958-IBu 0.96 1.39e-08 2.84e-06
Smp_131410.1 SmLINC00958-IBu 0.90 3.47e-06 1.00e-04
Smp_131490.1 SmLINC00958-IBu 0.90 3.57e-06 1.00e-04
Smp_137810.1 SmLINC00958-IBu 0.92 8.22e-07 4.64e-05
Smp_139160.1 SmLINC00958-IBu 0.90 4.72e-06 1.00e-04
Smp_139240.1 SmLINC00958-IBu 0.90 4.40e-06 1.00e-04
Smp_140720.1 SmLINC00958-IBu 0.97 1.00e-09 5.10e-07
Smp_155570.1 SmLINC00958-IBu 0.93 4.87e-07 3.22e-05
Smp_159650.1 SmLINC00958-IBu 0.93 3.23e-07 2.42e-05
Smp_162320.1 SmLINC00958-IBu 0.91 1.39e-06 6.76e-05
Smp_164320.1 SmLINC00958-IBu 0.91 2.10e-06 9.02e-05
Smp_181070.1 SmLINC00958-IBu 0.93 3.76e-07 2.70e-05
Smp_187140.1 SmLINC00958-IBu 0.91 1.71e-06 7.81e-05
Smp_192780.1 SmLINC00958-IBu 0.93 2.38e-07 1.96e-05
Smp_194910.1 SmLINC00958-IBu 0.92 1.00e-06 5.35e-05
Smp_202610.1 SmLINC00958-IBu 0.92 6.23e-07 3.83e-05
Smp_203030.1 SmLINC00958-IBu 0.96 4.34e-09 1.31e-06
Smp_205580.1 SmLINC00958-IBu 0.90 3.19e-06 1.00e-04