Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00937-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:39215213-39217666 - Strand: -


Fig. S5 for SmLINC00937-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00937-IBu 0 -2.77 -7.04 -2.58 2.07
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC00937-IBu 0.92 1.03e-06 5.46e-05
Smp_007950.1 SmLINC00937-IBu 0.90 3.50e-06 1.00e-04
Smp_041540.1 SmLINC00937-IBu 0.92 9.52e-07 5.15e-05
Smp_070540.1 SmLINC00937-IBu 0.94 1.85e-07 1.65e-05
Smp_105450.1 SmLINC00937-IBu 0.95 1.73e-08 3.29e-06
Smp_105450.2 SmLINC00937-IBu 0.94 1.24e-07 1.25e-05
Smp_126340.1 SmLINC00937-IBu 0.96 8.48e-09 2.04e-06
Smp_136730.1 SmLINC00937-IBu 0.94 7.38e-08 8.80e-06
Smp_137700.1 SmLINC00937-IBu 0.93 3.86e-07 2.74e-05
Smp_137720.1 SmLINC00937-IBu 0.90 2.95e-06 1.00e-04
Smp_138360.1 SmLINC00937-IBu 0.90 3.08e-06 1.00e-04
Smp_139160.1 SmLINC00937-IBu 0.92 8.88e-07 4.91e-05
Smp_139240.1 SmLINC00937-IBu 0.92 7.11e-07 4.20e-05
Smp_162320.1 SmLINC00937-IBu 0.90 3.42e-06 1.00e-04
Smp_163700.1 SmLINC00937-IBu 0.90 3.62e-06 1.00e-04
Smp_164400.1 SmLINC00937-IBu 0.90 3.84e-06 1.00e-04
Smp_181070.1 SmLINC00937-IBu 0.92 9.23e-07 5.04e-05
Smp_187140.1 SmLINC00937-IBu 0.91 1.39e-06 6.75e-05
Smp_194380.1 SmLINC00937-IBu 0.91 2.26e-06 9.48e-05
Smp_194910.1 SmLINC00937-IBu 0.92 7.81e-07 4.48e-05
Smp_205580.1 SmLINC00937-IBu 0.92 9.09e-07 4.99e-05