Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00890-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:34884279-34886421 - Strand: +


Fig. S5 for SmLINC00890-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00890-IBu 0 0.00 0.00 3.45 7.41
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 SmLINC00890-IBu 0.94 6.14e-08 7.76e-06
Smp_070540.1 SmLINC00890-IBu 0.90 2.75e-06 1.00e-04
Smp_086450.3 SmLINC00890-IBu 0.91 2.32e-06 9.66e-05
Smp_089270.1 SmLINC00890-IBu 0.93 2.57e-07 2.07e-05
Smp_105450.1 SmLINC00890-IBu 0.91 2.18e-06 9.24e-05
Smp_105450.2 SmLINC00890-IBu 0.93 4.79e-07 3.19e-05
Smp_130100.1 SmLINC00890-IBu 0.90 2.98e-06 1.00e-04
Smp_130970.1 SmLINC00890-IBu 0.94 7.78e-08 9.11e-06
Smp_137460.1 SmLINC00890-IBu 0.97 6.38e-10 3.81e-07
Smp_137700.1 SmLINC00890-IBu 0.90 2.73e-06 1.00e-04
Smp_138360.1 SmLINC00890-IBu 0.95 4.65e-08 6.43e-06
Smp_139160.1 SmLINC00890-IBu 0.90 2.87e-06 1.00e-04
Smp_152150.1 SmLINC00890-IBu 0.98 1.34e-11 3.30e-08
Smp_164400.1 SmLINC00890-IBu 0.98 1.59e-10 1.56e-07
Smp_167830.1 SmLINC00890-IBu 0.93 4.57e-07 3.09e-05
Smp_170840.1 SmLINC00890-IBu 0.95 3.79e-08 5.60e-06
Smp_181070.1 SmLINC00890-IBu 0.92 6.34e-07 3.87e-05