Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00872-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:34797058-34799873 - Strand: -


Fig. S5 for SmLINC00872-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC00872-IBu 0 -0.26 -4.11 -7.20 -4.24

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC00872-IBu 0.92 1.04e-06 5.51e-05
Smp_036270.4 SmLINC00872-IBu 0.92 7.88e-07 4.51e-05
Smp_111640.1 SmLINC00872-IBu 0.91 2.44e-06 1.00e-04
Smp_125070.1 SmLINC00872-IBu 0.94 7.95e-08 9.25e-06
Smp_168080.2 SmLINC00872-IBu 0.90 3.93e-06 1.00e-04
Smp_195070.1 SmLINC00872-IBu 0.91 1.39e-06 6.74e-05