Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00787-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:34093144-34122271 - Strand: -


Fig. 7A S3 for SmLINC00787-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201000.1 SmLINC00787-IBu 0.63 1.13e-02 3.80e-02
Fig. 6A for SmLINC00787-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_169590.1 0 -0.89 -3.79 -3.91 -5.03
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_203400.1 0 1.56 0.55 -7.76 -4.64
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032280.1 SmLINC00787-IBu 0.82 1.00e-04 1.70e-03
Smp_038980.2 SmLINC00787-IBu 0.89 5.36e-06 1.00e-04
Smp_046690.1 SmLINC00787-IBu 0.88 1.09e-05 2.00e-04
Smp_048060.1 SmLINC00787-IBu 0.94 1.84e-07 1.56e-05
Smp_084210.1 SmLINC00787-IBu 0.84 7.37e-05 1.10e-03
Smp_103140.1 SmLINC00787-IBu 0.84 8.43e-05 1.20e-03
Smp_123250.1 SmLINC00787-IBu 0.98 1.96e-11 3.80e-08
Smp_128400.1 SmLINC00787-IBu 0.80 3.00e-04 3.30e-03
Smp_133830.1 SmLINC00787-IBu 0.93 2.14e-07 1.74e-05
Smp_140390.1 SmLINC00787-IBu 0.90 3.16e-06 1.00e-04
Smp_142120.1 SmLINC00787-IBu 0.96 1.10e-08 2.28e-06
Smp_142460.1 SmLINC00787-IBu 0.85 4.06e-05 7.00e-04
Smp_143450.1 SmLINC00787-IBu 0.82 1.00e-04 2.00e-03
Smp_152770.1 SmLINC00787-IBu 0.96 1.07e-08 2.23e-06
Smp_164170.1 SmLINC00787-IBu 0.96 1.12e-08 2.31e-06
Smp_164180.1 SmLINC00787-IBu 0.94 9.01e-08 9.54e-06
Smp_169590.1 SmLINC00787-IBu 0.84 6.89e-05 1.00e-03
Smp_171540.2 SmLINC00787-IBu 0.94 8.29e-08 9.02e-06
Smp_172460.1 SmLINC00787-IBu 0.97 1.64e-09 6.50e-07
Smp_179390.1 SmLINC00787-IBu 0.80 2.00e-04 2.80e-03
Smp_179670.1 SmLINC00787-IBu 0.90 3.24e-06 1.00e-04
Smp_187410.1 SmLINC00787-IBu 0.97 4.15e-10 2.67e-07
Smp_193650.1 SmLINC00787-IBu 0.85 4.85e-05 8.00e-04
Smp_193700.1 SmLINC00787-IBu 0.83 9.83e-05 1.30e-03
Smp_193990.1 SmLINC00787-IBu 0.80 3.00e-04 3.40e-03
Smp_195090.1 SmLINC00787-IBu 0.94 1.09e-07 1.09e-05
Smp_196000.1 SmLINC00787-IBu 0.82 1.00e-04 1.90e-03
Smp_202030.1 SmLINC00787-IBu 0.91 1.80e-06 7.79e-05
Smp_202230.1 SmLINC00787-IBu 0.95 2.09e-08 3.51e-06
Smp_202720.1 SmLINC00787-IBu 0.81 2.00e-04 2.60e-03
Smp_202780.1 SmLINC00787-IBu 0.92 9.49e-07 4.94e-05
Smp_202840.1 SmLINC00787-IBu 0.91 2.33e-06 9.38e-05
Smp_202990.1 SmLINC00787-IBu 0.95 2.69e-08 4.17e-06
Smp_203400.1 SmLINC00787-IBu 0.84 8.81e-05 1.20e-03
Smp_203550.1 SmLINC00787-IBu 0.92 5.67e-07 3.43e-05
Smp_203820.1 SmLINC00787-IBu 0.94 1.26e-07 1.20e-05
Smp_205030.1 SmLINC00787-IBu 0.83 1.00e-04 1.40e-03
Smp_205220.1 SmLINC00787-IBu 0.80 3.00e-04 3.10e-03
Smp_206300.1 SmLINC00787-IBu 0.94 1.00e-07 1.03e-05
Smp_212350.1 SmLINC00787-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for SmLINC00787-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00787-IBu 0 1.80 -4.72 -2.61 -3.96
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_140390.1 SmLINC00787-IBu 0.9 3.16e-06 1.00e-04