Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00784-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:34093144-34122271 - Strand: -


Fig. 7A S3 for SmLINC00784-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
Smp_201000.1 0 6.84 0.00 2.13 2.38

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_201000.1 SmLINC00784-IBu 0.73 1.70e-03 9.40e-03
Fig. 6A for SmLINC00784-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_150070.1 0 0.81 -2.65 -7.50 -9.92
Smp_205930.1 0 0.31 -2.62 -7.34 -9.86
Smp_111340.6 0 0.97 -0.72 -7.78 -9.70
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_182030.1 0 -0.35 -4.07 -9.56 -9.56
Smp_002390.1 0 -0.32 -2.32 -7.83 -9.06
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_184400.1 0 0.15 -4.14 -8.88 -8.88
Smp_117000.1 0 1.20 -0.81 -7.47 -8.86
Smp_051670.1 0 -0.76 -2.49 -6.26 -8.85
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72
Smp_183080.1 0 1.61 -2.18 -8.70 -8.70
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_200510.1 0 -0.08 -3.12 -8.78 -8.58
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_191250.1 0 -0.43 -3.38 -7.55 -8.30
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26
Smp_204660.1 0 1.01 -4.53 -7.96 -8.16
Smp_200770.1 0 1.89 0.38 -8.15 -8.15
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_159130.1 0 0.25 -4.61 -5.63 -8.00
Smp_201940.1 0 1.70 -2.07 -7.99 -7.99
Smp_037540.1 0 -0.11 -2.67 -9.05 -7.89
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_205120.1 0 2.69 -1.75 -5.80 -7.84
Smp_178890.1 0 0.36 -2.67 -7.83 -7.83
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_200470.1 0 1.40 -2.54 -7.67 -7.67
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_178170.1 0 1.66 -1.97 -7.62 -7.62
Smp_110390.1 0 0.34 -1.79 -7.61 -7.61
Smp_107860.1 0 0.34 -1.79 -7.61 -7.61
Smp_107810.1 0 0.34 -1.79 -7.61 -7.61
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_019000.1 0 2.12 -4.51 -7.54 -7.54
Smp_113310.1 0 1.47 -2.62 -5.78 -7.51
Smp_136600.1 0 0.07 -2.48 -5.77 -7.33
Smp_049300.4 0 1.54 -4.40 -4.53 -7.24
Smp_203920.1 0 0.58 -2.39 -6.11 -7.08
Smp_178960.1 0 -0.22 -5.20 -9.36 -7.07
Smp_134770.1 0 0.04 -2.01 -4.85 -7.07
Smp_117990.1 0 -0.28 -2.23 -6.60 -7.02
Smp_196700.1 0 0.04 -8.78 -6.55 -6.98
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93
Smp_194870.1 0 -0.08 -1.47 -5.35 -6.77
Smp_111340.9 0 1.30 0.22 -5.61 -6.61
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59
Smp_204630.1 0 0.46 -1.10 -5.17 -6.57
Smp_092580.1 0 0.49 -1.03 -3.40 -6.43
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_185440.1 0 -0.12 -1.84 -5.54 -6.28
Smp_117620.1 0 0.28 -4.02 -5.77 -6.24
Smp_074610.1 0 -0.17 -3.08 -8.53 -6.22
Smp_187950.1 0 -0.66 -4.01 -6.21 -6.21
Smp_032920.1 0 -0.45 -4.95 -3.51 -6.20
Smp_060760.1 0 3.40 -1.02 -6.08 -6.08
Smp_171700.1 0 2.41 -0.03 -2.60 -6.02
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99
Smp_184860.1 0 2.74 -0.82 -5.81 -5.81
Smp_183790.1 0 1.84 -0.43 -2.43 -5.81
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_203470.1 0 2.08 0.59 -0.78 -5.76
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_049300.2 0 0.52 -2.77 -4.62 -5.61
Smp_089860.1 0 4.05 -0.23 -9.08 -5.43
Smp_202670.1 0 2.19 -3.90 -5.33 -5.33
Smp_147530.1 0 2.28 -0.50 -3.10 -5.24
Smp_179300.1 0 -0.63 -3.33 -6.15 -5.23
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_200010.1 0 6.19 -0.25 -7.50 -5.12
Smp_201930.1 0 1.32 -0.08 -4.89 -5.07
Smp_061590.2 0 0.20 -1.67 -5.35 -5.03
Smp_119130.1 0 -0.11 -2.24 -9.20 -4.94
Smp_171360.1 0 3.13 -2.66 -4.89 -4.89
Smp_205280.1 0 0.75 0.23 -4.69 -4.81
Smp_182940.1 0 4.10 -0.33 -4.76 -4.76
Smp_131830.1 0 1.24 0.03 -5.02 -4.76
Smp_038560.1 0 0.43 -3.62 -2.65 -4.65
Smp_009310.1 0 -0.72 -2.94 -4.33 -4.64
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_049250.1 0 1.49 -2.10 -4.41 -4.17
Smp_082430.1 0 0.56 -9.20 -5.69 -4.14
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_160200.1 0 -0.04 -2.03 -4.28 -4.07
Smp_072430.1 0 -0.24 -3.63 -7.73 -4.03
Smp_194830.1 0 -0.36 -5.36 -4.51 -3.97
Smp_094680.1 0 1.98 -4.03 -4.17 -3.96
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_020840.1 0 0.75 -4.50 -3.36 -3.70
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_201790.1 0 4.46 -3.38 -3.38 -3.38
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33
Smp_082240.1 0 -0.22 -3.45 -3.39 -3.32
Smp_080920.2 0 2.36 -1.44 -1.25 -3.25
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
Smp_163400.1 0 -0.26 -5.23 -5.31 -3.19
Smp_189120.1 0 3.83 -0.95 -5.44 -3.13
Smp_163710.1 0 0.07 -4.89 -1.71 -2.93
Smp_124140.1 0 2.40 0.33 -1.66 -2.77
Smp_165050.1 0 0.40 -6.48 -1.35 -2.34
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93
Smp_204650.1 0 7.45 2.61 0.00 2.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000380.1 SmLINC00784-IBu 0.82 1.00e-04 1.70e-03
Smp_002390.1 SmLINC00784-IBu 0.82 1.00e-04 2.00e-03
Smp_009310.1 SmLINC00784-IBu 0.81 1.00e-04 2.30e-03
Smp_019000.1 SmLINC00784-IBu 0.93 3.60e-07 2.50e-05
Smp_020840.1 SmLINC00784-IBu 0.87 2.28e-05 4.00e-04
Smp_021330.1 SmLINC00784-IBu 0.83 1.00e-04 1.50e-03
Smp_030010.1 SmLINC00784-IBu 0.83 9.07e-05 1.30e-03
Smp_032320.1 SmLINC00784-IBu 0.94 1.01e-07 1.04e-05
Smp_032920.1 SmLINC00784-IBu 0.89 5.08e-06 1.00e-04
Smp_032970.1 SmLINC00784-IBu 0.85 5.58e-05 9.00e-04
Smp_035200.3 SmLINC00784-IBu 0.88 1.19e-05 3.00e-04
Smp_036270.4 SmLINC00784-IBu 0.86 3.52e-05 6.00e-04
Smp_037540.1 SmLINC00784-IBu 0.86 3.73e-05 6.00e-04
Smp_038560.1 SmLINC00784-IBu 0.85 5.98e-05 9.00e-04
Smp_049250.1 SmLINC00784-IBu 0.89 5.39e-06 1.00e-04
Smp_049300.2 SmLINC00784-IBu 0.88 1.36e-05 3.00e-04
Smp_049300.4 SmLINC00784-IBu 0.85 5.72e-05 9.00e-04
Smp_051670.1 SmLINC00784-IBu 0.87 1.97e-05 4.00e-04
Smp_056680.2 SmLINC00784-IBu 0.85 4.89e-05 8.00e-04
Smp_056680.3 SmLINC00784-IBu 0.85 4.89e-05 8.00e-04
Smp_060760.1 SmLINC00784-IBu 0.89 5.43e-06 1.00e-04
Smp_061590.2 SmLINC00784-IBu 0.84 7.19e-05 1.10e-03
Smp_069220.1 SmLINC00784-IBu 0.80 3.00e-04 3.30e-03
Smp_072430.1 SmLINC00784-IBu 0.80 3.00e-04 3.20e-03
Smp_074610.1 SmLINC00784-IBu 0.91 1.30e-06 6.19e-05
Smp_077690.1 SmLINC00784-IBu 0.80 2.00e-04 2.70e-03
Smp_080920.1 SmLINC00784-IBu 0.88 1.05e-05 2.00e-04
Smp_080920.2 SmLINC00784-IBu 0.86 3.32e-05 6.00e-04
Smp_082240.1 SmLINC00784-IBu 0.86 3.27e-05 6.00e-04
Smp_082430.1 SmLINC00784-IBu 0.82 1.00e-04 1.70e-03
Smp_083340.4 SmLINC00784-IBu 0.82 1.00e-04 1.90e-03
Smp_089860.1 SmLINC00784-IBu 0.85 5.21e-05 8.00e-04
Smp_092580.1 SmLINC00784-IBu 0.80 3.00e-04 3.20e-03
Smp_094680.1 SmLINC00784-IBu 0.86 3.66e-05 6.00e-04
Smp_095460.1 SmLINC00784-IBu 0.88 1.28e-05 3.00e-04
Smp_100600.1 SmLINC00784-IBu 0.91 1.26e-06 6.06e-05
Smp_107810.1 SmLINC00784-IBu 0.87 2.17e-05 4.00e-04
Smp_107860.1 SmLINC00784-IBu 0.87 2.17e-05 4.00e-04
Smp_108390.1 SmLINC00784-IBu 0.87 2.21e-05 4.00e-04
Smp_110390.1 SmLINC00784-IBu 0.87 2.17e-05 4.00e-04
Smp_110400.1 SmLINC00784-IBu 0.89 5.53e-06 1.00e-04
Smp_111340.6 SmLINC00784-IBu 0.86 3.14e-05 6.00e-04
Smp_111340.9 SmLINC00784-IBu 0.84 8.16e-05 1.20e-03
Smp_111640.1 SmLINC00784-IBu 0.89 8.13e-06 2.00e-04
Smp_112090.1 SmLINC00784-IBu 0.93 1.99e-07 1.65e-05
Smp_113310.1 SmLINC00784-IBu 0.84 8.50e-05 1.20e-03
Smp_117000.1 SmLINC00784-IBu 0.90 3.56e-06 1.00e-04
Smp_117620.1 SmLINC00784-IBu 0.90 3.05e-06 1.00e-04
Smp_117990.1 SmLINC00784-IBu 0.80 2.00e-04 3.00e-03
Smp_119130.1 SmLINC00784-IBu 0.86 3.40e-05 6.00e-04
Smp_123100.1 SmLINC00784-IBu 0.91 1.57e-06 7.09e-05
Smp_124140.1 SmLINC00784-IBu 0.88 1.34e-05 3.00e-04
Smp_124830.1 SmLINC00784-IBu 0.87 1.80e-05 4.00e-04
Smp_125070.1 SmLINC00784-IBu 0.80 3.00e-04 3.30e-03
Smp_125140.1 SmLINC00784-IBu 0.85 4.27e-05 7.00e-04
Smp_128900.1 SmLINC00784-IBu 0.81 1.00e-04 2.30e-03
Smp_131830.1 SmLINC00784-IBu 0.92 9.86e-07 5.08e-05
Smp_134770.1 SmLINC00784-IBu 0.81 2.00e-04 2.70e-03
Smp_136600.1 SmLINC00784-IBu 0.93 3.31e-07 2.35e-05
Smp_143870.1 SmLINC00784-IBu 0.89 6.14e-06 1.00e-04
Smp_147530.1 SmLINC00784-IBu 0.84 6.62e-05 1.00e-03
Smp_150070.1 SmLINC00784-IBu 0.87 2.41e-05 5.00e-04
Smp_150450.1 SmLINC00784-IBu 0.86 2.70e-05 5.00e-04
Smp_159130.1 SmLINC00784-IBu 0.81 2.00e-04 2.60e-03
Smp_159610.1 SmLINC00784-IBu 0.87 1.94e-05 4.00e-04
Smp_160200.1 SmLINC00784-IBu 0.82 1.00e-04 2.00e-03
Smp_163400.1 SmLINC00784-IBu 0.92 7.43e-07 4.15e-05
Smp_163710.1 SmLINC00784-IBu 0.86 2.55e-05 5.00e-04
Smp_165050.1 SmLINC00784-IBu 0.86 3.55e-05 6.00e-04
Smp_165510.1 SmLINC00784-IBu 0.96 6.19e-09 1.55e-06
Smp_171360.1 SmLINC00784-IBu 0.87 1.89e-05 4.00e-04
Smp_171700.1 SmLINC00784-IBu 0.84 6.66e-05 1.00e-03
Smp_178170.1 SmLINC00784-IBu 0.92 5.33e-07 3.29e-05
Smp_178390.1 SmLINC00784-IBu 0.87 1.84e-05 4.00e-04
Smp_178890.1 SmLINC00784-IBu 0.96 8.80e-09 1.96e-06
Smp_178960.1 SmLINC00784-IBu 0.88 9.20e-06 2.00e-04
Smp_179300.1 SmLINC00784-IBu 0.80 2.00e-04 2.80e-03
Smp_179300.3 SmLINC00784-IBu 0.83 9.81e-05 1.30e-03
Smp_182030.1 SmLINC00784-IBu 0.85 4.65e-05 8.00e-04
Smp_182090.1 SmLINC00784-IBu 0.86 2.99e-05 5.00e-04
Smp_182940.1 SmLINC00784-IBu 0.84 7.57e-05 1.10e-03
Smp_183080.1 SmLINC00784-IBu 0.95 2.80e-08 4.29e-06
Smp_183570.1 SmLINC00784-IBu 0.96 1.19e-08 2.40e-06
Smp_183790.1 SmLINC00784-IBu 0.91 2.20e-06 8.99e-05
Smp_184400.1 SmLINC00784-IBu 0.95 4.86e-08 6.25e-06
Smp_184710.1 SmLINC00784-IBu 0.86 3.00e-05 5.00e-04
Smp_184760.1 SmLINC00784-IBu 0.93 2.60e-07 1.99e-05
Smp_184860.1 SmLINC00784-IBu 0.95 5.18e-08 6.54e-06
Smp_185080.1 SmLINC00784-IBu 0.80 2.00e-04 3.10e-03
Smp_185170.1 SmLINC00784-IBu 0.83 9.73e-05 1.30e-03
Smp_185440.1 SmLINC00784-IBu 0.88 1.12e-05 2.00e-04
Smp_185560.1 SmLINC00784-IBu 0.95 3.03e-08 4.52e-06
Smp_185680.1 SmLINC00784-IBu 0.89 6.19e-06 1.00e-04
Smp_185830.1 SmLINC00784-IBu 0.83 9.21e-05 1.30e-03
Smp_186020.1 SmLINC00784-IBu 0.89 8.22e-06 2.00e-04
Smp_187950.1 SmLINC00784-IBu 0.84 8.52e-05 1.20e-03
Smp_189120.1 SmLINC00784-IBu 0.92 5.34e-07 3.29e-05
Smp_191250.1 SmLINC00784-IBu 0.86 2.81e-05 5.00e-04
Smp_194830.1 SmLINC00784-IBu 0.84 7.07e-05 1.00e-03
Smp_194870.1 SmLINC00784-IBu 0.83 1.00e-04 1.50e-03
Smp_196700.1 SmLINC00784-IBu 0.83 1.00e-04 1.60e-03
Smp_199470.1 SmLINC00784-IBu 0.87 1.88e-05 4.00e-04
Smp_199850.1 SmLINC00784-IBu 0.80 3.00e-04 3.30e-03
Smp_200010.1 SmLINC00784-IBu 0.88 1.27e-05 3.00e-04
Smp_200470.1 SmLINC00784-IBu 0.90 4.52e-06 1.00e-04
Smp_200510.1 SmLINC00784-IBu 0.90 4.20e-06 1.00e-04
Smp_200770.1 SmLINC00784-IBu 0.80 2.00e-04 2.80e-03
Smp_200900.1 SmLINC00784-IBu 0.90 4.83e-06 1.00e-04
Smp_201790.1 SmLINC00784-IBu 0.87 2.14e-05 4.00e-04
Smp_201930.1 SmLINC00784-IBu 0.90 4.31e-06 1.00e-04
Smp_201940.1 SmLINC00784-IBu 0.80 2.00e-04 2.70e-03
Smp_202490.1 SmLINC00784-IBu 0.90 4.38e-06 1.00e-04
Smp_202670.1 SmLINC00784-IBu 0.93 4.13e-07 2.75e-05
Smp_203100.1 SmLINC00784-IBu 0.88 9.10e-06 2.00e-04
Smp_203380.1 SmLINC00784-IBu 0.89 4.89e-06 1.00e-04
Smp_203470.1 SmLINC00784-IBu 0.82 1.00e-04 1.90e-03
Smp_203920.1 SmLINC00784-IBu 0.87 1.66e-05 3.00e-04
Smp_204360.1 SmLINC00784-IBu 0.86 3.04e-05 5.00e-04
Smp_204460.1 SmLINC00784-IBu 0.86 2.92e-05 5.00e-04
Smp_204630.1 SmLINC00784-IBu 0.83 1.00e-04 1.50e-03
Smp_204650.1 SmLINC00784-IBu 0.86 3.70e-05 6.00e-04
Smp_204660.1 SmLINC00784-IBu 0.88 1.33e-05 3.00e-04
Smp_205120.1 SmLINC00784-IBu 0.92 6.83e-07 3.91e-05
Smp_205280.1 SmLINC00784-IBu 0.87 2.15e-05 4.00e-04
Smp_205450.1 SmLINC00784-IBu 0.87 2.40e-05 5.00e-04
Smp_205460.1 SmLINC00784-IBu 0.92 7.18e-07 4.06e-05
Smp_205780.1 SmLINC00784-IBu 0.80 2.00e-04 2.90e-03
Smp_205930.1 SmLINC00784-IBu 0.87 1.75e-05 3.00e-04
Fig. S5 for SmLINC00784-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC00784-IBu 0.94 1.01e-07 1.09e-05
Smp_112090.1 SmLINC00784-IBu 0.93 1.99e-07 1.73e-05
Smp_184760.1 SmLINC00784-IBu 0.93 2.60e-07 2.09e-05