Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00781-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:34073279-34075069 - Strand: -


Fig. S5 for SmLINC00781-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC00781-IBu 0.96 4.56e-09 1.36e-06
Smp_021340.3 SmLINC00781-IBu 0.94 1.24e-07 1.25e-05
Smp_032120.1 SmLINC00781-IBu 0.91 1.26e-06 6.31e-05
Smp_034840.1 SmLINC00781-IBu 0.92 8.89e-07 4.91e-05
Smp_036270.3 SmLINC00781-IBu 0.93 4.18e-07 2.90e-05
Smp_059340.3 SmLINC00781-IBu 0.96 3.12e-09 1.06e-06
Smp_059530.1 SmLINC00781-IBu 0.92 6.22e-07 3.83e-05
Smp_062070.1 SmLINC00781-IBu 0.92 9.44e-07 5.12e-05
Smp_062610.2 SmLINC00781-IBu 0.92 9.47e-07 5.13e-05
Smp_083380.2 SmLINC00781-IBu 0.94 1.23e-07 1.24e-05
Smp_084940.2 SmLINC00781-IBu 0.92 9.08e-07 4.98e-05
Smp_098370.1 SmLINC00781-IBu 0.92 6.48e-07 3.93e-05
Smp_099160.4 SmLINC00781-IBu 0.92 6.01e-07 3.73e-05
Smp_103540.1 SmLINC00781-IBu 0.95 3.82e-08 5.63e-06
Smp_168800.1 SmLINC00781-IBu 0.92 1.03e-06 5.45e-05