Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00763-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:33926971-33950380 - Strand: -


Fig. S5 for SmLINC00763-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
SmLINC00763-IBu 0 0.29 -12.05 -6.81 -12.05
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC00763-IBu 0.95 1.64e-08 3.19e-06
Smp_032970.1 SmLINC00763-IBu 0.91 1.87e-06 8.31e-05
Smp_036270.4 SmLINC00763-IBu 0.92 1.03e-06 5.45e-05
Smp_111640.1 SmLINC00763-IBu 0.90 3.12e-06 1.00e-04
Smp_112090.1 SmLINC00763-IBu 0.98 5.33e-11 7.84e-08
Smp_182090.1 SmLINC00763-IBu 0.91 2.07e-06 8.93e-05
Smp_185680.1 SmLINC00763-IBu 0.90 3.63e-06 1.00e-04
Smp_204360.1 SmLINC00763-IBu 0.91 2.10e-06 9.02e-05