Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00715-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:32234411-32244142 - Strand: -


Fig. S5 for SmLINC00715-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00715-IBu 0 0.00 0.00 7.79 9.66
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016490.2 SmLINC00715-IBu 0.92 1.00e-06 5.36e-05
Smp_037720.1 SmLINC00715-IBu 0.95 1.77e-08 3.35e-06
Smp_041540.1 SmLINC00715-IBu 0.93 4.03e-07 2.82e-05
Smp_070540.1 SmLINC00715-IBu 0.91 1.30e-06 6.44e-05
Smp_102780.1 SmLINC00715-IBu 0.91 2.20e-06 9.32e-05
Smp_105450.2 SmLINC00715-IBu 0.91 2.37e-06 9.80e-05
Smp_130100.1 SmLINC00715-IBu 0.94 1.90e-07 1.68e-05
Smp_137810.1 SmLINC00715-IBu 0.92 8.72e-07 4.84e-05
Smp_140720.1 SmLINC00715-IBu 0.97 1.87e-09 7.62e-07
Smp_152150.1 SmLINC00715-IBu 0.90 2.69e-06 1.00e-04
Smp_155570.1 SmLINC00715-IBu 0.92 1.02e-06 5.42e-05
Smp_164400.1 SmLINC00715-IBu 0.90 2.69e-06 1.00e-04
Smp_170840.1 SmLINC00715-IBu 0.90 2.73e-06 1.00e-04
Smp_181070.1 SmLINC00715-IBu 0.92 1.01e-06 5.39e-05
Smp_187140.1 SmLINC00715-IBu 0.90 3.39e-06 1.00e-04
Smp_194910.1 SmLINC00715-IBu 0.90 2.68e-06 1.00e-04
Smp_196830.1 SmLINC00715-IBu 0.91 1.75e-06 7.93e-05
Smp_202610.1 SmLINC00715-IBu 0.90 3.77e-06 1.00e-04
Smp_203030.1 SmLINC00715-IBu 0.94 8.64e-08 9.79e-06