Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00714-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:32232312-32244985 - Strand: -


Fig. S5 for SmLINC00714-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00714-IBu 0 0.00 5.32 7.47 9.97
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_089270.1 SmLINC00714-IBu 0.92 1.10e-06 5.73e-05
Smp_152150.1 SmLINC00714-IBu 0.93 4.64e-07 3.12e-05
Smp_164400.1 SmLINC00714-IBu 0.91 1.71e-06 7.81e-05
Smp_167830.1 SmLINC00714-IBu 0.91 1.46e-06 6.97e-05
Smp_170840.1 SmLINC00714-IBu 0.93 4.34e-07 2.97e-05