Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00674-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:31486570-31488772 - Strand: -


Fig. S5 for SmLINC00674-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
SmLINC00674-IBu 0 -2.62 -2.93 -7.07 -6.23
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 SmLINC00674-IBu 0.90 3.91e-06 1.00e-04
Smp_071380.2 SmLINC00674-IBu 0.93 2.92e-07 2.26e-05
Smp_106390.1 SmLINC00674-IBu 0.90 3.52e-06 1.00e-04