Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00570-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:28585838-28600308 - Strand: +


Fig. S5 for SmLINC00570-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
SmLINC00570-IBu 0 6.80 10.63 12.14 13.35
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC00570-IBu 0.91 1.61e-06 7.47e-05
Smp_016490.2 SmLINC00570-IBu 0.92 9.16e-07 5.01e-05
Smp_028870.1 SmLINC00570-IBu 0.92 6.77e-07 4.05e-05
Smp_033260.1 SmLINC00570-IBu 0.92 8.56e-07 4.78e-05
Smp_037720.1 SmLINC00570-IBu 0.92 6.80e-07 4.07e-05
Smp_050350.3 SmLINC00570-IBu 0.94 1.50e-07 1.43e-05
Smp_052280.2 SmLINC00570-IBu 0.93 2.63e-07 2.10e-05
Smp_056460.1 SmLINC00570-IBu 0.93 3.77e-07 2.70e-05
Smp_083430.1 SmLINC00570-IBu 0.94 1.56e-07 1.47e-05
Smp_085180.1 SmLINC00570-IBu 0.91 2.04e-06 8.82e-05
Smp_102780.1 SmLINC00570-IBu 0.92 5.34e-07 3.44e-05
Smp_123880.1 SmLINC00570-IBu 0.92 1.13e-06 5.82e-05
Smp_130100.1 SmLINC00570-IBu 0.91 2.48e-06 1.00e-04
Smp_131410.1 SmLINC00570-IBu 0.92 8.95e-07 4.93e-05
Smp_131490.1 SmLINC00570-IBu 0.91 1.94e-06 8.54e-05
Smp_137810.1 SmLINC00570-IBu 0.94 9.52e-08 1.04e-05
Smp_140720.1 SmLINC00570-IBu 0.94 1.91e-07 1.69e-05
Smp_155570.1 SmLINC00570-IBu 0.95 2.41e-08 4.12e-06
Smp_159650.1 SmLINC00570-IBu 0.90 3.25e-06 1.00e-04
Smp_163700.1 SmLINC00570-IBu 0.90 2.80e-06 1.00e-04
Smp_164320.1 SmLINC00570-IBu 0.92 7.68e-07 4.43e-05
Smp_169670.1 SmLINC00570-IBu 0.91 1.22e-06 6.15e-05
Smp_187140.1 SmLINC00570-IBu 0.90 3.43e-06 1.00e-04
Smp_192780.1 SmLINC00570-IBu 0.93 4.26e-07 2.94e-05
Smp_194380.1 SmLINC00570-IBu 0.91 2.41e-06 9.93e-05
Smp_196830.1 SmLINC00570-IBu 0.93 2.60e-07 2.08e-05
Smp_202610.1 SmLINC00570-IBu 0.94 7.94e-08 9.24e-06
Smp_203030.1 SmLINC00570-IBu 0.92 6.62e-07 3.99e-05