Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00568-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:28511776-28512771 - Strand: +


Fig. S5 for SmLINC00568-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC00568-IBu 0.92 1.19e-06 6.06e-05
Smp_031000.1 SmLINC00568-IBu 0.91 2.42e-06 9.95e-05
Smp_043670.2 SmLINC00568-IBu 0.93 2.91e-07 2.25e-05
Smp_096020.1 SmLINC00568-IBu 0.94 1.21e-07 1.23e-05
Smp_170800.1 SmLINC00568-IBu 0.90 4.67e-06 1.00e-04
Smp_182890.1 SmLINC00568-IBu 0.96 2.48e-09 9.15e-07
Smp_186130.1 SmLINC00568-IBu 0.93 4.63e-07 3.11e-05
Smp_192890.1 SmLINC00568-IBu 0.93 3.18e-07 2.40e-05
Smp_205860.1 SmLINC00568-IBu 0.98 2.37e-11 4.73e-08
Smp_206200.1 SmLINC00568-IBu 0.97 3.49e-10 2.60e-07