Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00566-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:28510560-28511239 - Strand: +


Fig. S5 for SmLINC00566-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_155570.1 0 -0.46 1.69 9.73 11.27
SmLINC00566-IBu 0 5.66 8.04 9.99 11.30
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC00566-IBu 0.90 4.49e-06 1.00e-04
Smp_016490.2 SmLINC00566-IBu 0.90 4.58e-06 1.00e-04
Smp_028870.1 SmLINC00566-IBu 0.91 1.33e-06 6.55e-05
Smp_050350.3 SmLINC00566-IBu 0.90 3.09e-06 1.00e-04
Smp_052280.2 SmLINC00566-IBu 0.92 7.56e-07 4.38e-05
Smp_083430.1 SmLINC00566-IBu 0.92 5.39e-07 3.46e-05
Smp_085180.1 SmLINC00566-IBu 0.91 1.92e-06 8.46e-05
Smp_102780.1 SmLINC00566-IBu 0.91 1.82e-06 8.14e-05
Smp_123880.1 SmLINC00566-IBu 0.91 2.19e-06 9.29e-05
Smp_131410.1 SmLINC00566-IBu 0.90 3.10e-06 1.00e-04
Smp_131490.1 SmLINC00566-IBu 0.93 4.84e-07 3.21e-05
Smp_137810.1 SmLINC00566-IBu 0.91 1.98e-06 8.64e-05
Smp_155570.1 SmLINC00566-IBu 0.92 1.06e-06 5.57e-05
Smp_159650.1 SmLINC00566-IBu 0.90 2.56e-06 1.00e-04
Smp_163700.1 SmLINC00566-IBu 0.90 2.76e-06 1.00e-04
Smp_164320.1 SmLINC00566-IBu 0.91 2.01e-06 8.74e-05
Smp_202610.1 SmLINC00566-IBu 0.93 4.88e-07 3.23e-05