Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00565-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:28510560-28511239 - Strand: +


Fig. S5 for SmLINC00565-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC00565-IBu 0.90 2.98e-06 1.00e-04
Smp_051230.4 SmLINC00565-IBu 0.91 1.48e-06 7.06e-05
Smp_077690.1 SmLINC00565-IBu 0.90 3.57e-06 1.00e-04
Smp_134410.1 SmLINC00565-IBu 0.91 2.07e-06 8.92e-05
Smp_149670.1 SmLINC00565-IBu 0.93 2.08e-07 1.79e-05
Smp_168080.2 SmLINC00565-IBu 0.93 3.48e-07 2.55e-05
Smp_188900.1 SmLINC00565-IBu 0.94 7.25e-08 8.69e-06
Smp_195070.1 SmLINC00565-IBu 0.95 3.17e-08 4.96e-06