Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00556-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:27277103-27278105 - Strand: -


Fig. 7A S3 for SmLINC00556-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.1 SmLINC00556-IBu 0.56 2.95e-02 7.60e-02
Smp_120920.2 SmLINC00556-IBu 0.70 3.40e-03 1.58e-02
Smp_120920.3 SmLINC00556-IBu 0.72 2.10e-03 1.10e-02
Fig. 6A for SmLINC00556-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39
Smp_120640.2 0 -1.11 -1.94 -7.48 -9.70
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_099160.2 0 -1.87 -2.30 -5.96 -7.41
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_142360.2 0 -0.91 -2.52 -7.51 -7.13
Smp_058680.1 0 -0.24 -3.97 -6.58 -7.11
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04
Smp_189290.1 0 -1.39 -2.16 -5.67 -6.85
Smp_186230.1 0 -0.68 -2.99 -6.79 -6.79
Smp_187740.1 0 -1.94 -3.53 -5.17 -6.76
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_179110.1 0 -1.09 -2.38 -5.56 -6.62
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52
Smp_052230.1 0 -1.19 -3.35 -5.82 -6.52
Smp_132210.1 0 -1.38 -3.96 -4.62 -6.30
Smp_201990.1 0 -0.43 -3.29 -5.97 -5.97
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
Smp_152730.1 0 -0.96 -1.50 -5.44 -5.88
Smp_205800.1 0 -0.55 -2.89 -6.44 -5.86
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_136390.1 0 -0.66 -2.03 -5.71 -5.55
Smp_154250.1 0 -0.91 -2.50 -5.33 -5.48
Smp_096240.1 0 -0.85 -1.42 -4.96 -5.45
Smp_158310.1 0 -0.00 -0.69 -4.11 -5.43
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22
Smp_212390.1 0 -0.91 -2.72 -3.77 -5.20
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_206230.1 0 -0.00 -1.55 -6.64 -5.08
Smp_206240.1 0 -0.00 -1.55 -6.64 -5.08
Smp_146230.1 0 -1.07 -2.58 -3.88 -5.04
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_126440.1 0 -0.22 -1.00 -4.55 -4.91
Smp_078550.1 0 -0.05 -0.57 -4.38 -4.91
Smp_131320.1 0 -0.70 -1.85 -4.63 -4.85
Smp_177240.1 0 -0.50 -2.01 -4.28 -4.82
Smp_212280.1 0 -0.76 -4.70 -3.16 -4.81
Smp_105910.1 0 -0.41 -0.91 -4.58 -4.76
Smp_147090.1 0 -1.07 -2.38 -5.49 -4.74
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_189960.1 0 -1.05 -1.90 -3.92 -4.65
Smp_002820.3 0 -0.31 -1.11 -4.63 -4.63
Smp_068220.1 0 -0.45 -1.37 -3.77 -4.59
Smp_021870.1 0 -0.42 -1.33 -4.52 -4.56
Smp_077380.1 0 -1.50 -2.45 -4.87 -4.54
Smp_032480.1 0 -0.33 -0.97 -4.24 -4.52
Smp_129330.1 0 -0.37 -1.05 -3.94 -4.37
Smp_168950.1 0 -0.96 -1.82 -4.29 -4.36
Smp_159150.2 0 -0.33 -1.24 -3.88 -4.34
Smp_056930.1 0 -0.59 -0.95 -3.96 -4.29
Smp_175650.1 0 -0.56 -1.39 -4.37 -4.24
Smp_091390.1 0 -0.40 -2.18 -5.03 -4.11
Smp_085790.1 0 -1.16 -3.98 -5.85 -4.07
Smp_095480.1 0 -0.60 -5.00 -4.31 -4.03
Smp_036760.1 0 -0.61 -1.22 -4.16 -4.01
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_060900.1 0 -0.42 -1.33 -4.11 -3.92
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_203840.1 0 -0.44 -0.71 -5.88 -3.84
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_180530.2 0 -0.92 -2.89 -6.22 -3.78
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_175240.1 0 -0.51 -4.28 -7.25 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_130420.1 0 -0.24 -2.28 -5.10 -3.38
Smp_076040.3 0 -0.55 -3.71 -3.72 -3.34
Smp_129920.1 0 -0.74 -3.51 -5.41 -2.45
Smp_086220.1 0 -2.36 0.42 2.51 3.05
Smp_063630.1 0 -1.74 0.18 2.85 3.22
Smp_165150.1 0 -2.23 2.21 3.32 3.30
Smp_042280.1 0 -0.52 0.36 2.84 3.46
Smp_114590.1 0 -0.60 0.10 2.85 3.53
Smp_160860.1 0 -2.24 1.45 3.21 3.55
Smp_142760.1 0 -0.62 1.93 3.33 3.72
Smp_212800.1 0 -1.25 1.16 3.14 3.75
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_167000.1 0 0.21 1.53 3.39 4.01
Smp_068710.1 0 -0.37 1.37 3.96 4.03
Smp_210920.1 0 0.05 2.33 3.47 4.04
Smp_088950.1 0 -0.37 2.54 3.00 4.07
Smp_074230.1 0 -0.19 0.08 3.18 4.07
Smp_024390.3 0 0.14 1.58 2.91 4.12
Smp_127930.1 0 0.51 1.34 3.29 4.16
Smp_139900.1 0 0.35 2.33 4.21 4.19
Smp_158350.1 0 0.58 3.00 4.31 4.30
Smp_157760.1 0 -0.37 0.29 3.34 4.30
Smp_128070.1 0 0.08 2.21 4.01 4.31
Smp_026670.1 0 -0.23 3.85 4.50 4.38
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_072080.1 0 -0.83 0.27 3.80 4.44
Smp_051070.1 0 0.99 2.32 3.90 4.45
Smp_126550.1 0 1.28 2.79 4.36 4.47
Smp_154460.1 0 0.18 2.05 3.56 4.51
Smp_163160.1 0 1.15 3.44 4.46 4.56
Smp_007550.1 0 0.03 3.98 3.90 4.57
Smp_145510.1 0 -0.40 2.08 3.15 4.60
Smp_213620.1 0 0.42 2.27 3.80 4.65
Smp_192300.1 0 -0.54 1.98 4.92 4.67
Smp_151440.1 0 -1.42 1.57 4.03 4.77
Smp_027500.1 0 -0.52 1.53 4.18 4.77
Smp_162890.1 0 -0.14 0.40 3.97 4.86
Smp_144920.1 0 0.61 2.49 4.01 4.87
Smp_172500.1 0 -0.00 3.03 5.12 4.90
Smp_142520.1 0 0.41 2.11 4.44 4.93
Smp_042400.1 0 -0.94 1.58 3.75 4.94
Smp_137130.1 0 0.81 3.24 4.81 4.94
Smp_160540.1 0 0.12 1.30 3.88 5.00
Smp_171120.1 0 0.37 2.83 3.41 5.05
Smp_187090.1 0 -2.20 2.85 4.55 5.08
Smp_052470.1 0 0.01 2.21 3.78 5.14
Smp_156090.1 0 1.38 3.36 5.03 5.19
Smp_129450.1 0 1.12 2.82 4.52 5.24
Smp_134620.1 0 0.64 3.07 4.84 5.32
Smp_010770.2 0 0.51 3.05 4.56 5.38
Smp_148630.1 0 -0.81 2.35 4.78 5.53
Smp_149170.1 0 0.04 3.98 5.57 5.54
Smp_146830.1 0 0.73 4.00 5.43 5.54
Smp_200300.1 0 1.45 3.46 4.66 5.56
Smp_062070.2 0 -1.68 2.58 5.15 5.63
Smp_131580.1 0 0.97 4.14 5.61 5.80
Smp_153540.1 0 -0.31 2.57 4.90 5.84
Smp_155820.1 0 0.58 3.71 5.77 5.87
Smp_155540.1 0 0.42 3.63 4.97 6.10
Smp_063330.1 0 0.85 2.04 5.71 6.49
Smp_035040.1 0 1.86 4.10 6.28 6.57
Smp_159640.1 0 -1.83 3.78 6.77 6.81
Smp_149580.1 0 -0.53 4.61 6.59 7.02
Smp_138010.1 0 2.43 3.97 6.67 7.62
Smp_002150.1 0 2.53 7.46 9.01 9.87
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_052280.2 0 4.60 9.23 11.90 12.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002150.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_002820.3 SmLINC00556-IBu 0.80 3.00e-04 3.40e-03
Smp_007550.1 SmLINC00556-IBu -0.84 8.52e-05 1.20e-03
Smp_010770.2 SmLINC00556-IBu -0.85 4.24e-05 7.00e-04
Smp_014400.1 SmLINC00556-IBu 0.86 3.55e-05 6.00e-04
Smp_014400.3 SmLINC00556-IBu 0.84 8.50e-05 1.20e-03
Smp_017290.4 SmLINC00556-IBu -0.87 1.64e-05 3.00e-04
Smp_021870.1 SmLINC00556-IBu 0.83 1.00e-04 1.40e-03
Smp_024390.3 SmLINC00556-IBu -0.83 9.90e-05 1.40e-03
Smp_026670.1 SmLINC00556-IBu -0.81 1.00e-04 2.10e-03
Smp_027500.1 SmLINC00556-IBu -0.80 3.00e-04 3.40e-03
Smp_032480.1 SmLINC00556-IBu 0.81 2.00e-04 2.50e-03
Smp_033930.1 SmLINC00556-IBu 0.81 2.00e-04 2.30e-03
Smp_035040.1 SmLINC00556-IBu -0.83 1.00e-04 1.40e-03
Smp_036760.1 SmLINC00556-IBu 0.82 1.00e-04 2.10e-03
Smp_041730.3 SmLINC00556-IBu 0.84 7.50e-05 1.10e-03
Smp_042280.1 SmLINC00556-IBu -0.86 3.85e-05 7.00e-04
Smp_042400.1 SmLINC00556-IBu -0.84 7.14e-05 1.10e-03
Smp_048160.1 SmLINC00556-IBu 0.87 2.15e-05 4.00e-04
Smp_051070.1 SmLINC00556-IBu -0.84 8.11e-05 1.20e-03
Smp_052230.1 SmLINC00556-IBu 0.95 3.92e-08 5.40e-06
Smp_052280.2 SmLINC00556-IBu -0.81 2.00e-04 2.50e-03
Smp_052470.1 SmLINC00556-IBu -0.85 3.94e-05 7.00e-04
Smp_053760.1 SmLINC00556-IBu 0.82 1.00e-04 1.70e-03
Smp_056930.1 SmLINC00556-IBu 0.82 1.00e-04 1.70e-03
Smp_058680.1 SmLINC00556-IBu 0.85 5.93e-05 9.00e-04
Smp_060900.1 SmLINC00556-IBu 0.81 2.00e-04 2.50e-03
Smp_062070.2 SmLINC00556-IBu -0.81 1.00e-04 2.20e-03
Smp_063330.1 SmLINC00556-IBu -0.80 3.00e-04 3.20e-03
Smp_063630.1 SmLINC00556-IBu -0.82 1.00e-04 2.10e-03
Smp_068220.1 SmLINC00556-IBu 0.84 6.73e-05 1.00e-03
Smp_068710.1 SmLINC00556-IBu -0.80 2.00e-04 2.90e-03
Smp_072080.1 SmLINC00556-IBu -0.82 1.00e-04 2.00e-03
Smp_072110.1 SmLINC00556-IBu 0.83 1.00e-04 1.60e-03
Smp_074230.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_076040.3 SmLINC00556-IBu 0.87 2.09e-05 4.00e-04
Smp_077380.1 SmLINC00556-IBu 0.88 1.24e-05 3.00e-04
Smp_078550.1 SmLINC00556-IBu 0.80 3.00e-04 3.30e-03
Smp_081790.1 SmLINC00556-IBu -0.81 2.00e-04 2.50e-03
Smp_085790.1 SmLINC00556-IBu 0.90 3.39e-06 1.00e-04
Smp_086220.1 SmLINC00556-IBu -0.83 9.93e-05 1.40e-03
Smp_088950.1 SmLINC00556-IBu -0.90 4.76e-06 1.00e-04
Smp_091390.1 SmLINC00556-IBu 0.82 1.00e-04 1.70e-03
Smp_095480.1 SmLINC00556-IBu 0.90 3.96e-06 1.00e-04
Smp_096240.1 SmLINC00556-IBu 0.83 1.00e-04 1.50e-03
Smp_099160.2 SmLINC00556-IBu 0.82 1.00e-04 1.80e-03
Smp_104000.1 SmLINC00556-IBu -0.82 1.00e-04 1.80e-03
Smp_105910.1 SmLINC00556-IBu 0.81 2.00e-04 2.50e-03
Smp_114590.1 SmLINC00556-IBu -0.84 8.69e-05 1.20e-03
Smp_120640.2 SmLINC00556-IBu 0.87 1.76e-05 4.00e-04
Smp_126440.1 SmLINC00556-IBu 0.87 2.15e-05 4.00e-04
Smp_126550.1 SmLINC00556-IBu -0.81 2.00e-04 2.40e-03
Smp_127930.1 SmLINC00556-IBu -0.83 1.00e-04 1.60e-03
Smp_128070.1 SmLINC00556-IBu -0.82 1.00e-04 1.70e-03
Smp_128400.1 SmLINC00556-IBu 0.81 2.00e-04 2.30e-03
Smp_129330.1 SmLINC00556-IBu 0.84 6.69e-05 1.00e-03
Smp_129450.1 SmLINC00556-IBu -0.85 5.49e-05 9.00e-04
Smp_129920.1 SmLINC00556-IBu 0.91 1.64e-06 7.32e-05
Smp_130420.1 SmLINC00556-IBu 0.80 2.00e-04 3.10e-03
Smp_131320.1 SmLINC00556-IBu 0.85 5.17e-05 8.00e-04
Smp_131580.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_132210.1 SmLINC00556-IBu 0.88 1.08e-05 2.00e-04
Smp_133830.1 SmLINC00556-IBu 0.82 1.00e-04 1.90e-03
Smp_134620.1 SmLINC00556-IBu -0.80 2.00e-04 2.90e-03
Smp_136390.1 SmLINC00556-IBu 0.88 1.11e-05 2.00e-04
Smp_137130.1 SmLINC00556-IBu -0.84 8.81e-05 1.20e-03
Smp_138010.1 SmLINC00556-IBu -0.82 1.00e-04 1.70e-03
Smp_139900.1 SmLINC00556-IBu -0.80 2.00e-04 2.90e-03
Smp_142360.2 SmLINC00556-IBu 0.85 5.37e-05 8.00e-04
Smp_142520.1 SmLINC00556-IBu -0.80 3.00e-04 3.40e-03
Smp_142760.1 SmLINC00556-IBu -0.80 3.00e-04 3.20e-03
Smp_144920.1 SmLINC00556-IBu -0.81 1.00e-04 2.30e-03
Smp_145510.1 SmLINC00556-IBu -0.82 1.00e-04 1.90e-03
Smp_146230.1 SmLINC00556-IBu 0.89 7.48e-06 2.00e-04
Smp_146830.1 SmLINC00556-IBu -0.85 5.39e-05 9.00e-04
Smp_147090.1 SmLINC00556-IBu 0.86 3.76e-05 6.00e-04
Smp_148630.1 SmLINC00556-IBu -0.85 4.13e-05 7.00e-04
Smp_149170.1 SmLINC00556-IBu -0.81 2.00e-04 2.70e-03
Smp_149200.1 SmLINC00556-IBu 0.88 1.44e-05 3.00e-04
Smp_149580.1 SmLINC00556-IBu -0.85 5.18e-05 8.00e-04
Smp_151440.1 SmLINC00556-IBu -0.80 2.00e-04 3.00e-03
Smp_152730.1 SmLINC00556-IBu 0.82 1.00e-04 1.90e-03
Smp_153540.1 SmLINC00556-IBu -0.89 6.51e-06 1.00e-04
Smp_154250.1 SmLINC00556-IBu 0.85 4.15e-05 7.00e-04
Smp_154460.1 SmLINC00556-IBu -0.84 8.49e-05 1.20e-03
Smp_155540.1 SmLINC00556-IBu -0.84 8.42e-05 1.20e-03
Smp_155820.1 SmLINC00556-IBu -0.81 2.00e-04 2.40e-03
Smp_156090.1 SmLINC00556-IBu -0.82 1.00e-04 2.10e-03
Smp_157760.1 SmLINC00556-IBu -0.82 1.00e-04 1.70e-03
Smp_158310.1 SmLINC00556-IBu 0.82 1.00e-04 1.90e-03
Smp_158350.1 SmLINC00556-IBu -0.82 1.00e-04 2.00e-03
Smp_159150.2 SmLINC00556-IBu 0.84 8.22e-05 1.20e-03
Smp_159350.1 SmLINC00556-IBu 0.84 6.42e-05 1.00e-03
Smp_159640.1 SmLINC00556-IBu -0.81 2.00e-04 2.60e-03
Smp_160540.1 SmLINC00556-IBu -0.84 6.80e-05 1.00e-03
Smp_160860.1 SmLINC00556-IBu -0.86 2.87e-05 5.00e-04
Smp_162890.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_163160.1 SmLINC00556-IBu -0.80 3.00e-04 3.30e-03
Smp_164170.1 SmLINC00556-IBu 0.86 2.70e-05 5.00e-04
Smp_165150.1 SmLINC00556-IBu -0.82 1.00e-04 1.80e-03
Smp_167000.1 SmLINC00556-IBu -0.87 1.82e-05 4.00e-04
Smp_168950.1 SmLINC00556-IBu 0.90 4.47e-06 1.00e-04
Smp_169670.1 SmLINC00556-IBu -0.83 1.00e-04 1.40e-03
Smp_171120.1 SmLINC00556-IBu -0.82 1.00e-04 2.00e-03
Smp_172460.1 SmLINC00556-IBu 0.80 3.00e-04 3.30e-03
Smp_172500.1 SmLINC00556-IBu -0.80 2.00e-04 2.80e-03
Smp_175240.1 SmLINC00556-IBu 0.85 4.47e-05 7.00e-04
Smp_175650.1 SmLINC00556-IBu 0.82 1.00e-04 2.00e-03
Smp_177240.1 SmLINC00556-IBu 0.81 2.00e-04 2.40e-03
Smp_179110.1 SmLINC00556-IBu 0.93 3.57e-07 2.48e-05
Smp_179270.1 SmLINC00556-IBu 0.83 1.00e-04 1.50e-03
Smp_180530.2 SmLINC00556-IBu 0.84 8.81e-05 1.20e-03
Smp_186230.1 SmLINC00556-IBu 0.80 3.00e-04 3.20e-03
Smp_187090.1 SmLINC00556-IBu -0.80 3.00e-04 3.20e-03
Smp_187740.1 SmLINC00556-IBu 0.80 3.00e-04 3.30e-03
Smp_189290.1 SmLINC00556-IBu 0.82 1.00e-04 2.10e-03
Smp_189960.1 SmLINC00556-IBu 0.83 9.67e-05 1.30e-03
Smp_192300.1 SmLINC00556-IBu -0.80 3.00e-04 3.10e-03
Smp_195090.1 SmLINC00556-IBu 0.88 1.44e-05 3.00e-04
Smp_195150.1 SmLINC00556-IBu 0.82 1.00e-04 1.80e-03
Smp_196000.1 SmLINC00556-IBu 0.92 7.69e-07 4.26e-05
Smp_200300.1 SmLINC00556-IBu -0.84 6.31e-05 1.00e-03
Smp_201900.1 SmLINC00556-IBu 0.82 1.00e-04 2.10e-03
Smp_201990.1 SmLINC00556-IBu 0.88 9.53e-06 2.00e-04
Smp_203840.1 SmLINC00556-IBu 0.81 1.00e-04 2.30e-03
Smp_205030.1 SmLINC00556-IBu 0.90 2.82e-06 1.00e-04
Smp_205080.1 SmLINC00556-IBu 0.81 2.00e-04 2.40e-03
Smp_205800.1 SmLINC00556-IBu 0.92 6.09e-07 3.61e-05
Smp_206230.1 SmLINC00556-IBu 0.81 2.00e-04 2.40e-03
Smp_206240.1 SmLINC00556-IBu 0.81 2.00e-04 2.40e-03
Smp_206250.1 SmLINC00556-IBu 0.83 1.00e-04 1.60e-03
Smp_210920.1 SmLINC00556-IBu -0.85 4.85e-05 8.00e-04
Smp_212280.1 SmLINC00556-IBu 0.84 8.11e-05 1.20e-03
Smp_212290.1 SmLINC00556-IBu 0.83 1.00e-04 1.40e-03
Smp_212390.1 SmLINC00556-IBu 0.83 9.07e-05 1.30e-03
Smp_212800.1 SmLINC00556-IBu -0.87 1.86e-05 4.00e-04
Smp_213620.1 SmLINC00556-IBu -0.88 1.14e-05 2.00e-04