Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00554-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:27270335-27282665 - Strand: +


Fig. 7A S3 for SmLINC00554-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_120920.2 SmLINC00554-IBu 0.87 2.46e-05 3.00e-04
Smp_120920.3 SmLINC00554-IBu 0.63 1.15e-02 3.85e-02
Fig. 6A for SmLINC00554-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_149200.1 0 -0.55 -1.34 -4.23 -7.36
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_058680.1 0 -0.24 -3.97 -6.58 -7.11
Smp_186230.1 0 -0.68 -2.99 -6.79 -6.79
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_179110.1 0 -1.09 -2.38 -5.56 -6.62
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52
Smp_052230.1 0 -1.19 -3.35 -5.82 -6.52
Smp_132210.1 0 -1.38 -3.96 -4.62 -6.30
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
Smp_205800.1 0 -0.55 -2.89 -6.44 -5.86
Smp_062080.1 0 0.17 -4.18 -7.09 -5.78
Smp_136390.1 0 -0.66 -2.03 -5.71 -5.55
Smp_154250.1 0 -0.91 -2.50 -5.33 -5.48
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22
Smp_212390.1 0 -0.91 -2.72 -3.77 -5.20
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_131320.1 0 -0.70 -1.85 -4.63 -4.85
Smp_177240.1 0 -0.50 -2.01 -4.28 -4.82
Smp_212280.1 0 -0.76 -4.70 -3.16 -4.81
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_187010.1 0 0.47 -5.64 -3.81 -4.52
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44
Smp_168950.1 0 -0.96 -1.82 -4.29 -4.36
Smp_159150.2 0 -0.33 -1.24 -3.88 -4.34
Smp_091390.1 0 -0.40 -2.18 -5.03 -4.11
Smp_095480.1 0 -0.60 -5.00 -4.31 -4.03
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_165230.1 0 -0.81 -3.30 -3.70 -4.00
Smp_060900.1 0 -0.42 -1.33 -4.11 -3.92
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_188780.1 0 0.05 -9.06 -3.40 -3.54
Smp_130420.1 0 -0.24 -2.28 -5.10 -3.38
Smp_076040.3 0 -0.55 -3.71 -3.72 -3.34
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
Smp_129920.1 0 -0.74 -3.51 -5.41 -2.45
Smp_091460.1 0 -0.82 -5.40 -2.97 -2.35
Smp_136850.2 0 -2.73 0.98 1.99 2.74
Smp_165150.1 0 -2.23 2.21 3.32 3.30
Smp_042280.1 0 -0.52 0.36 2.84 3.46
Smp_160860.1 0 -2.24 1.45 3.21 3.55
Smp_142760.1 0 -0.62 1.93 3.33 3.72
Smp_212800.1 0 -1.25 1.16 3.14 3.75
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_167000.1 0 0.21 1.53 3.39 4.01
Smp_210920.1 0 0.05 2.33 3.47 4.04
Smp_052990.1 0 -0.52 2.98 4.39 4.07
Smp_088950.1 0 -0.37 2.54 3.00 4.07
Smp_146720.1 0 0.62 4.79 4.89 4.19
Smp_158350.1 0 0.58 3.00 4.31 4.30
Smp_026670.1 0 -0.23 3.85 4.50 4.38
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_126550.1 0 1.28 2.79 4.36 4.47
Smp_154460.1 0 0.18 2.05 3.56 4.51
Smp_007550.1 0 0.03 3.98 3.90 4.57
Smp_152940.1 0 1.37 4.33 4.63 4.64
Smp_213620.1 0 0.42 2.27 3.80 4.65
Smp_144730.1 0 -1.15 3.34 3.09 4.66
Smp_043820.1 0 1.49 3.31 4.56 4.81
Smp_203390.1 0 1.08 3.39 4.79 4.84
Smp_138510.1 0 1.54 4.65 4.95 4.85
Smp_172500.1 0 -0.00 3.03 5.12 4.90
Smp_137130.1 0 0.81 3.24 4.81 4.94
Smp_175970.1 0 0.87 3.16 5.38 5.08
Smp_052470.1 0 0.01 2.21 3.78 5.14
Smp_131600.1 0 1.35 6.02 6.04 5.18
Smp_156090.1 0 1.38 3.36 5.03 5.19
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_158880.1 0 1.21 5.25 6.12 5.41
Smp_146830.1 0 0.73 4.00 5.43 5.54
Smp_173010.1 0 1.23 5.33 5.49 5.58
Smp_153540.1 0 -0.31 2.57 4.90 5.84
Smp_148640.1 0 0.05 6.07 6.14 5.86
Smp_077330.1 0 2.59 6.48 7.48 7.22
Smp_059350.1 0 3.85 6.63 8.17 7.92
Smp_159860.1 0 4.07 7.44 8.30 8.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007550.1 SmLINC00554-IBu -0.92 9.96e-07 5.12e-05
Smp_014400.3 SmLINC00554-IBu 0.85 4.11e-05 7.00e-04
Smp_017290.4 SmLINC00554-IBu -0.85 4.03e-05 7.00e-04
Smp_026670.1 SmLINC00554-IBu -0.88 1.10e-05 2.00e-04
Smp_033930.1 SmLINC00554-IBu 0.88 1.08e-05 2.00e-04
Smp_038730.10 SmLINC00554-IBu 0.80 3.00e-04 3.10e-03
Smp_041730.3 SmLINC00554-IBu 0.82 1.00e-04 2.10e-03
Smp_042280.1 SmLINC00554-IBu -0.83 1.00e-04 1.60e-03
Smp_043820.1 SmLINC00554-IBu -0.82 1.00e-04 1.70e-03
Smp_046930.1 SmLINC00554-IBu 0.82 1.00e-04 2.00e-03
Smp_048160.1 SmLINC00554-IBu 0.85 5.38e-05 9.00e-04
Smp_052230.1 SmLINC00554-IBu 0.85 5.55e-05 9.00e-04
Smp_052470.1 SmLINC00554-IBu -0.83 1.00e-04 1.50e-03
Smp_052990.1 SmLINC00554-IBu -0.82 1.00e-04 2.00e-03
Smp_058680.1 SmLINC00554-IBu 0.94 6.69e-08 7.78e-06
Smp_059350.1 SmLINC00554-IBu -0.80 2.00e-04 3.00e-03
Smp_060900.1 SmLINC00554-IBu 0.81 1.00e-04 2.20e-03
Smp_062080.1 SmLINC00554-IBu 0.88 9.02e-06 2.00e-04
Smp_072110.1 SmLINC00554-IBu 0.89 5.50e-06 1.00e-04
Smp_072190.1 SmLINC00554-IBu -0.85 3.99e-05 7.00e-04
Smp_076040.3 SmLINC00554-IBu 0.85 5.99e-05 9.00e-04
Smp_077330.1 SmLINC00554-IBu -0.80 2.00e-04 2.70e-03
Smp_081790.1 SmLINC00554-IBu -0.80 3.00e-04 3.40e-03
Smp_088950.1 SmLINC00554-IBu -0.85 5.64e-05 9.00e-04
Smp_091390.1 SmLINC00554-IBu 0.87 1.53e-05 3.00e-04
Smp_091460.1 SmLINC00554-IBu 0.94 7.49e-08 8.41e-06
Smp_095480.1 SmLINC00554-IBu 0.86 3.31e-05 6.00e-04
Smp_104000.1 SmLINC00554-IBu -0.82 1.00e-04 1.90e-03
Smp_120920.2 SmLINC00554-IBu 0.87 2.46e-05 5.00e-04
Smp_125070.1 SmLINC00554-IBu 0.82 1.00e-04 1.70e-03
Smp_126550.1 SmLINC00554-IBu -0.81 2.00e-04 2.30e-03
Smp_129920.1 SmLINC00554-IBu 0.94 1.11e-07 1.10e-05
Smp_130420.1 SmLINC00554-IBu 0.89 8.31e-06 2.00e-04
Smp_131320.1 SmLINC00554-IBu 0.84 6.87e-05 1.00e-03
Smp_131600.1 SmLINC00554-IBu -0.80 3.00e-04 3.20e-03
Smp_132210.1 SmLINC00554-IBu 0.88 1.10e-05 2.00e-04
Smp_133830.1 SmLINC00554-IBu 0.80 2.00e-04 3.00e-03
Smp_136390.1 SmLINC00554-IBu 0.84 8.45e-05 1.20e-03
Smp_136850.2 SmLINC00554-IBu -0.82 1.00e-04 2.10e-03
Smp_137130.1 SmLINC00554-IBu -0.80 2.00e-04 2.70e-03
Smp_138510.1 SmLINC00554-IBu -0.85 4.49e-05 7.00e-04
Smp_142760.1 SmLINC00554-IBu -0.82 1.00e-04 2.00e-03
Smp_144730.1 SmLINC00554-IBu -0.84 7.93e-05 1.10e-03
Smp_146720.1 SmLINC00554-IBu -0.82 1.00e-04 1.70e-03
Smp_146830.1 SmLINC00554-IBu -0.81 1.00e-04 2.20e-03
Smp_148640.1 SmLINC00554-IBu -0.81 2.00e-04 2.40e-03
Smp_149200.1 SmLINC00554-IBu 0.81 2.00e-04 2.70e-03
Smp_152940.1 SmLINC00554-IBu -0.86 3.82e-05 7.00e-04
Smp_153540.1 SmLINC00554-IBu -0.85 4.99e-05 8.00e-04
Smp_154250.1 SmLINC00554-IBu 0.88 1.33e-05 3.00e-04
Smp_154460.1 SmLINC00554-IBu -0.86 2.76e-05 5.00e-04
Smp_156090.1 SmLINC00554-IBu -0.84 7.13e-05 1.10e-03
Smp_158350.1 SmLINC00554-IBu -0.83 1.00e-04 1.60e-03
Smp_158880.1 SmLINC00554-IBu -0.82 1.00e-04 2.10e-03
Smp_159150.2 SmLINC00554-IBu 0.82 1.00e-04 1.70e-03
Smp_159860.1 SmLINC00554-IBu -0.80 2.00e-04 3.00e-03
Smp_160860.1 SmLINC00554-IBu -0.89 8.05e-06 2.00e-04
Smp_164170.1 SmLINC00554-IBu 0.86 3.42e-05 6.00e-04
Smp_165150.1 SmLINC00554-IBu -0.81 1.00e-04 2.20e-03
Smp_165230.1 SmLINC00554-IBu 0.87 1.59e-05 3.00e-04
Smp_167000.1 SmLINC00554-IBu -0.91 1.89e-06 8.07e-05
Smp_168950.1 SmLINC00554-IBu 0.83 1.00e-04 1.40e-03
Smp_172500.1 SmLINC00554-IBu -0.84 7.29e-05 1.10e-03
Smp_173010.1 SmLINC00554-IBu -0.84 6.70e-05 1.00e-03
Smp_175970.1 SmLINC00554-IBu -0.86 2.99e-05 5.00e-04
Smp_177240.1 SmLINC00554-IBu 0.81 2.00e-04 2.50e-03
Smp_179110.1 SmLINC00554-IBu 0.80 2.00e-04 3.00e-03
Smp_179270.1 SmLINC00554-IBu 0.81 2.00e-04 2.60e-03
Smp_186230.1 SmLINC00554-IBu 0.80 3.00e-04 3.30e-03
Smp_187010.1 SmLINC00554-IBu 0.88 1.43e-05 3.00e-04
Smp_188780.1 SmLINC00554-IBu 0.87 2.39e-05 5.00e-04
Smp_195090.1 SmLINC00554-IBu 0.82 1.00e-04 2.10e-03
Smp_196000.1 SmLINC00554-IBu 0.86 2.92e-05 5.00e-04
Smp_203390.1 SmLINC00554-IBu -0.82 1.00e-04 1.80e-03
Smp_205030.1 SmLINC00554-IBu 0.80 3.00e-04 3.40e-03
Smp_205800.1 SmLINC00554-IBu 0.80 3.00e-04 3.30e-03
Smp_210920.1 SmLINC00554-IBu -0.80 2.00e-04 2.80e-03
Smp_212280.1 SmLINC00554-IBu 0.94 1.30e-07 1.23e-05
Smp_212290.1 SmLINC00554-IBu 0.87 2.29e-05 4.00e-04
Smp_212390.1 SmLINC00554-IBu 0.90 4.75e-06 1.00e-04
Smp_212800.1 SmLINC00554-IBu -0.82 1.00e-04 1.70e-03
Smp_213620.1 SmLINC00554-IBu -0.90 4.44e-06 1.00e-04