Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00544-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:27094383-27096071 - Strand: -


Fig. S5 for SmLINC00544-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
SmLINC00544-IBu 0 0.00 0.00 10.42 8.08
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC00544-IBu 0.99 1.85e-15 1.37e-10
Smp_014780.1 SmLINC00544-IBu 0.94 1.19e-07 1.22e-05
Smp_017610.1 SmLINC00544-IBu 0.93 4.36e-07 2.98e-05
Smp_045200.1 SmLINC00544-IBu 0.93 4.23e-07 2.92e-05
Smp_058140.3 SmLINC00544-IBu 0.94 1.53e-07 1.45e-05
Smp_081920.1 SmLINC00544-IBu 0.98 2.48e-11 4.86e-08
Smp_082580.1 SmLINC00544-IBu 0.97 1.28e-09 5.99e-07
Smp_084270.1 SmLINC00544-IBu 0.94 1.73e-07 1.58e-05
Smp_105730.1 SmLINC00544-IBu 0.98 1.00e-10 1.17e-07
Smp_118560.1 SmLINC00544-IBu 0.96 8.01e-09 1.97e-06
Smp_123200.1 SmLINC00544-IBu 0.94 6.42e-08 8.00e-06
Smp_125210.1 SmLINC00544-IBu 0.93 4.16e-07 2.89e-05
Smp_128510.1 SmLINC00544-IBu 0.92 6.63e-07 4.00e-05
Smp_131840.1 SmLINC00544-IBu 0.98 7.69e-12 2.34e-08
Smp_134960.1 SmLINC00544-IBu 0.95 3.18e-08 4.97e-06
Smp_141680.1 SmLINC00544-IBu 0.93 3.33e-07 2.47e-05
Smp_154180.1 SmLINC00544-IBu 0.98 2.05e-11 4.30e-08
Smp_154190.1 SmLINC00544-IBu 0.93 2.03e-07 1.76e-05
Smp_160360.1 SmLINC00544-IBu 0.93 3.72e-07 2.67e-05
Smp_163940.1 SmLINC00544-IBu 0.94 1.20e-07 1.23e-05
Smp_164550.1 SmLINC00544-IBu 0.91 1.21e-06 6.13e-05
Smp_170280.1 SmLINC00544-IBu 0.91 2.12e-06 9.06e-05
Smp_172520.1 SmLINC00544-IBu 0.99 2.58e-14 7.04e-10
Smp_175020.1 SmLINC00544-IBu 0.93 2.35e-07 1.94e-05
Smp_194960.1 SmLINC00544-IBu 0.97 1.79e-09 7.41e-07
Smp_194970.1 SmLINC00544-IBu 0.98 1.00e-10 1.16e-07
Smp_194980.1 SmLINC00544-IBu 0.98 6.08e-11 8.52e-08
Smp_197400.1 SmLINC00544-IBu 0.96 2.45e-09 9.08e-07
Smp_200750.1 SmLINC00544-IBu 0.92 1.09e-06 5.67e-05
Smp_205270.1 SmLINC00544-IBu 0.90 2.82e-06 1.00e-04