Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00513-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:24932402-24932888 - Strand: -


Fig. S5 for SmLINC00513-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC00513-IBu 0.90 4.23e-06 1.00e-04
Smp_017650.1 SmLINC00513-IBu 0.93 3.25e-07 2.43e-05
Smp_021340.3 SmLINC00513-IBu 0.94 1.19e-07 1.22e-05
Smp_032120.1 SmLINC00513-IBu 0.96 2.80e-09 9.90e-07
Smp_034840.1 SmLINC00513-IBu 0.91 1.85e-06 8.23e-05
Smp_036270.3 SmLINC00513-IBu 0.93 3.75e-07 2.69e-05
Smp_040970.3 SmLINC00513-IBu 0.91 1.52e-06 7.17e-05
Smp_059340.3 SmLINC00513-IBu 0.91 2.03e-06 8.80e-05
Smp_062070.1 SmLINC00513-IBu 0.96 6.74e-09 1.75e-06
Smp_062610.2 SmLINC00513-IBu 0.90 3.93e-06 1.00e-04
Smp_063650.3 SmLINC00513-IBu 0.92 8.07e-07 4.59e-05
Smp_084940.2 SmLINC00513-IBu 0.95 4.37e-08 6.17e-06
Smp_098370.1 SmLINC00513-IBu 0.97 6.43e-10 3.84e-07
Smp_099160.4 SmLINC00513-IBu 0.94 8.84e-08 9.94e-06
Smp_103540.1 SmLINC00513-IBu 0.95 2.53e-08 4.25e-06
Smp_159070.3 SmLINC00513-IBu 0.94 1.20e-07 1.22e-05
Smp_159150.1 SmLINC00513-IBu 0.94 1.48e-07 1.41e-05
Smp_200120.1 SmLINC00513-IBu 0.93 3.36e-07 2.49e-05