Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00457-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:23948391-23951041 - Strand: -


Fig. S5 for SmLINC00457-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC00457-IBu 0 2.61 3.24 8.14 8.35
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC00457-IBu 0.94 1.17e-07 1.20e-05
Smp_031040.1 SmLINC00457-IBu 0.96 7.48e-09 1.88e-06
Smp_033260.1 SmLINC00457-IBu 0.94 1.44e-07 1.39e-05
Smp_034980.2 SmLINC00457-IBu 0.95 4.14e-08 5.94e-06
Smp_038870.2 SmLINC00457-IBu 0.95 4.95e-08 6.71e-06
Smp_040970.2 SmLINC00457-IBu 0.97 7.38e-10 4.19e-07
Smp_045200.1 SmLINC00457-IBu 0.92 7.97e-07 4.55e-05
Smp_050350.3 SmLINC00457-IBu 0.92 1.01e-06 5.39e-05
Smp_051210.3 SmLINC00457-IBu 0.92 8.76e-07 4.86e-05
Smp_052280.2 SmLINC00457-IBu 0.92 8.29e-07 4.67e-05
Smp_055340.2 SmLINC00457-IBu 0.93 4.56e-07 3.08e-05
Smp_056360.3 SmLINC00457-IBu 0.91 2.48e-06 1.00e-04
Smp_056460.1 SmLINC00457-IBu 0.94 8.34e-08 9.56e-06
Smp_058660.1 SmLINC00457-IBu 0.96 1.20e-08 2.58e-06
Smp_068270.1 SmLINC00457-IBu 0.90 4.79e-06 1.00e-04
Smp_079420.1 SmLINC00457-IBu 0.97 9.76e-10 5.01e-07
Smp_082580.1 SmLINC00457-IBu 0.90 3.96e-06 1.00e-04
Smp_094050.1 SmLINC00457-IBu 0.92 7.28e-07 4.27e-05
Smp_095410.1 SmLINC00457-IBu 0.93 3.21e-07 2.41e-05
Smp_137000.2 SmLINC00457-IBu 0.95 1.61e-08 3.14e-06
Smp_137320.1 SmLINC00457-IBu 0.94 8.16e-08 9.42e-06
Smp_141680.1 SmLINC00457-IBu 0.92 6.87e-07 4.10e-05
Smp_145400.1 SmLINC00457-IBu 0.97 9.93e-10 5.07e-07
Smp_150980.2 SmLINC00457-IBu 0.94 1.60e-07 1.49e-05
Smp_151120.1 SmLINC00457-IBu 0.94 9.08e-08 1.01e-05
Smp_156930.1 SmLINC00457-IBu 0.90 3.74e-06 1.00e-04
Smp_159070.2 SmLINC00457-IBu 0.95 3.78e-08 5.59e-06
Smp_164550.1 SmLINC00457-IBu 0.90 2.71e-06 1.00e-04
Smp_169670.1 SmLINC00457-IBu 0.90 3.39e-06 1.00e-04
Smp_170280.1 SmLINC00457-IBu 0.92 9.67e-07 5.21e-05
Smp_172480.1 SmLINC00457-IBu 0.98 1.20e-10 1.31e-07
Smp_172960.1 SmLINC00457-IBu 0.96 4.11e-09 1.27e-06
Smp_192780.1 SmLINC00457-IBu 0.90 3.14e-06 1.00e-04
Smp_194860.1 SmLINC00457-IBu 0.96 2.78e-09 9.86e-07
Smp_203090.1 SmLINC00457-IBu 0.95 3.20e-08 5.00e-06
Smp_205270.1 SmLINC00457-IBu 0.97 1.33e-09 6.13e-07