Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00440-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:23460947-23463754 - Strand: -


Fig. S5 for SmLINC00440-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
SmLINC00440-IBu 0 3.10 -2.58 5.70 4.98
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC00440-IBu 0.91 1.79e-06 8.04e-05
Smp_034980.2 SmLINC00440-IBu 0.93 2.57e-07 2.07e-05
Smp_045200.1 SmLINC00440-IBu 0.92 1.00e-06 5.36e-05
Smp_058660.1 SmLINC00440-IBu 0.91 1.80e-06 8.10e-05
Smp_068270.1 SmLINC00440-IBu 0.95 1.50e-08 2.99e-06
Smp_082580.1 SmLINC00440-IBu 0.92 5.26e-07 3.40e-05
Smp_084270.1 SmLINC00440-IBu 0.94 1.93e-07 1.70e-05
Smp_105730.1 SmLINC00440-IBu 0.91 1.78e-06 8.03e-05
Smp_125200.1 SmLINC00440-IBu 0.91 1.68e-06 7.70e-05
Smp_125210.1 SmLINC00440-IBu 0.95 4.82e-08 6.59e-06
Smp_128510.1 SmLINC00440-IBu 0.90 4.78e-06 1.00e-04
Smp_131840.1 SmLINC00440-IBu 0.91 2.05e-06 8.85e-05
Smp_134960.1 SmLINC00440-IBu 0.93 4.30e-07 2.96e-05
Smp_137320.1 SmLINC00440-IBu 0.90 3.18e-06 1.00e-04
Smp_141680.1 SmLINC00440-IBu 0.91 2.08e-06 8.94e-05
Smp_145400.1 SmLINC00440-IBu 0.90 4.60e-06 1.00e-04
Smp_150980.2 SmLINC00440-IBu 0.91 1.74e-06 7.91e-05
Smp_154180.1 SmLINC00440-IBu 0.90 2.52e-06 1.00e-04
Smp_154190.1 SmLINC00440-IBu 0.93 2.12e-07 1.81e-05
Smp_159070.2 SmLINC00440-IBu 0.91 2.14e-06 9.14e-05
Smp_160360.1 SmLINC00440-IBu 0.93 2.87e-07 2.23e-05
Smp_164550.1 SmLINC00440-IBu 0.95 1.76e-08 3.33e-06
Smp_170280.1 SmLINC00440-IBu 0.95 5.77e-08 7.44e-06
Smp_172480.1 SmLINC00440-IBu 0.92 9.12e-07 5.00e-05
Smp_194960.1 SmLINC00440-IBu 0.93 2.68e-07 2.13e-05
Smp_194970.1 SmLINC00440-IBu 0.91 1.33e-06 6.53e-05
Smp_197400.1 SmLINC00440-IBu 0.92 1.11e-06 5.74e-05
Smp_200750.1 SmLINC00440-IBu 0.92 5.57e-07 3.54e-05
Smp_205270.1 SmLINC00440-IBu 0.93 4.56e-07 3.08e-05