Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00425-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:22721695-22723405 - Strand: +


Fig. S5 for SmLINC00425-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00425-IBu 0 -1.59 -0.26 3.23 -0.52
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC00425-IBu 0.94 1.40e-07 1.36e-05
Smp_017610.1 SmLINC00425-IBu 0.95 1.91e-08 3.52e-06
Smp_081920.1 SmLINC00425-IBu 0.90 4.43e-06 1.00e-04
Smp_082580.1 SmLINC00425-IBu 0.92 1.04e-06 5.49e-05
Smp_084270.1 SmLINC00425-IBu 0.93 3.94e-07 2.78e-05
Smp_105730.1 SmLINC00425-IBu 0.96 8.05e-09 1.97e-06
Smp_118560.1 SmLINC00425-IBu 0.93 2.33e-07 1.93e-05
Smp_125210.1 SmLINC00425-IBu 0.91 1.20e-06 6.09e-05
Smp_128510.1 SmLINC00425-IBu 0.95 4.60e-08 6.38e-06
Smp_131840.1 SmLINC00425-IBu 0.95 3.68e-08 5.49e-06
Smp_134960.1 SmLINC00425-IBu 0.92 5.85e-07 3.66e-05
Smp_154180.1 SmLINC00425-IBu 0.95 3.65e-08 5.46e-06
Smp_154190.1 SmLINC00425-IBu 0.92 6.79e-07 4.06e-05
Smp_160360.1 SmLINC00425-IBu 0.95 4.79e-08 6.56e-06
Smp_163940.1 SmLINC00425-IBu 0.93 2.62e-07 2.10e-05
Smp_164550.1 SmLINC00425-IBu 0.91 1.51e-06 7.15e-05
Smp_172520.1 SmLINC00425-IBu 0.95 3.82e-08 5.63e-06
Smp_175020.1 SmLINC00425-IBu 0.94 7.47e-08 8.87e-06
Smp_194960.1 SmLINC00425-IBu 0.93 3.49e-07 2.56e-05
Smp_194970.1 SmLINC00425-IBu 0.94 7.20e-08 8.65e-06
Smp_194980.1 SmLINC00425-IBu 0.95 3.36e-08 5.16e-06
Smp_197400.1 SmLINC00425-IBu 0.96 3.72e-09 1.19e-06
Smp_200750.1 SmLINC00425-IBu 0.91 1.64e-06 7.56e-05