Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00394-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:21388521-21390158 - Strand: -


Fig. S5 for SmLINC00394-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00394-IBu 0 -0.50 -1.27 2.08 7.78
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 SmLINC00394-IBu 0.92 7.01e-07 4.16e-05
Smp_041540.1 SmLINC00394-IBu 0.98 2.64e-12 1.20e-08
Smp_070540.1 SmLINC00394-IBu 0.99 1.69e-12 9.16e-09
Smp_089270.1 SmLINC00394-IBu 0.90 4.38e-06 1.00e-04
Smp_105450.1 SmLINC00394-IBu 0.97 2.45e-10 2.07e-07
Smp_105450.2 SmLINC00394-IBu 0.96 1.38e-08 2.83e-06
Smp_126340.1 SmLINC00394-IBu 0.98 2.22e-12 1.08e-08
Smp_136730.1 SmLINC00394-IBu 0.95 3.05e-08 4.83e-06
Smp_137460.1 SmLINC00394-IBu 0.93 4.88e-07 3.23e-05
Smp_137700.1 SmLINC00394-IBu 0.90 4.31e-06 1.00e-04
Smp_138360.1 SmLINC00394-IBu 0.90 3.87e-06 1.00e-04
Smp_139160.1 SmLINC00394-IBu 0.92 5.25e-07 3.40e-05
Smp_139240.1 SmLINC00394-IBu 0.91 1.36e-06 6.63e-05
Smp_152150.1 SmLINC00394-IBu 0.94 1.43e-07 1.38e-05
Smp_164400.1 SmLINC00394-IBu 0.96 8.59e-09 2.06e-06
Smp_167830.1 SmLINC00394-IBu 0.90 3.72e-06 1.00e-04
Smp_170840.1 SmLINC00394-IBu 0.91 1.58e-06 7.38e-05
Smp_181070.1 SmLINC00394-IBu 0.93 3.18e-07 2.40e-05
Smp_187140.1 SmLINC00394-IBu 0.91 1.90e-06 8.41e-05
Smp_194910.1 SmLINC00394-IBu 0.92 8.67e-07 4.82e-05
Smp_205580.1 SmLINC00394-IBu 0.90 4.16e-06 1.00e-04