Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00378-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:20447957-20449804 - Strand: -


Fig. S5 for SmLINC00378-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
SmLINC00378-IBu 0 0.65 -0.05 -4.62 -5.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_086600.1 SmLINC00378-IBu 0.91 1.69e-06 7.74e-05
Smp_109340.1 SmLINC00378-IBu 0.93 4.56e-07 3.08e-05
Smp_212510.1 SmLINC00378-IBu 0.90 4.02e-06 1.00e-04