Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00367-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:19726734-19728165 - Strand: +


Fig. S5 for SmLINC00367-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
SmLINC00367-IBu 0 -0.32 -2.33 -6.04 -11.31
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC00367-IBu 0.90 3.61e-06 1.00e-04
Smp_035200.3 SmLINC00367-IBu 0.91 1.40e-06 6.77e-05
Smp_036270.4 SmLINC00367-IBu 0.94 1.02e-07 1.10e-05
Smp_077690.1 SmLINC00367-IBu 0.93 4.13e-07 2.87e-05
Smp_112090.1 SmLINC00367-IBu 0.91 2.02e-06 8.76e-05
Smp_160230.1 SmLINC00367-IBu 0.91 1.61e-06 7.47e-05
Smp_184760.1 SmLINC00367-IBu 0.94 8.63e-08 9.79e-06