Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00311-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:18194417-18213695 - Strand: +


Fig. S5 for SmLINC00311-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
SmLINC00311-IBu 0 -0.38 -1.64 -13.37 -13.37
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC00311-IBu 0.91 1.95e-06 8.56e-05
Smp_035200.3 SmLINC00311-IBu 0.90 3.09e-06 1.00e-04
Smp_036270.4 SmLINC00311-IBu 0.97 1.98e-09 7.90e-07
Smp_111640.1 SmLINC00311-IBu 0.91 1.47e-06 7.02e-05
Smp_112090.1 SmLINC00311-IBu 0.91 1.98e-06 8.65e-05
Smp_160230.1 SmLINC00311-IBu 0.91 1.88e-06 8.34e-05
Smp_184710.1 SmLINC00311-IBu 0.90 4.62e-06 1.00e-04
Smp_205450.1 SmLINC00311-IBu 0.92 6.40e-07 3.90e-05