Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00298-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:17610457-17621109 - Strand: +


Fig. S5 for SmLINC00298-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC00298-IBu 0.90 2.92e-06 1.00e-04
Smp_182890.1 SmLINC00298-IBu 0.90 2.91e-06 1.00e-04
Smp_186130.1 SmLINC00298-IBu 0.94 1.39e-07 1.36e-05
Smp_192890.1 SmLINC00298-IBu 0.93 2.62e-07 2.10e-05
Smp_205860.1 SmLINC00298-IBu 0.92 5.18e-07 3.36e-05
Smp_206200.1 SmLINC00298-IBu 0.93 2.97e-07 2.29e-05