Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00265-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:16052663-16053460 - Strand: -


Fig. S5 for SmLINC00265-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00265-IBu 0 3.68 3.11 2.56 7.84
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC00265-IBu 0.90 4.71e-06 1.00e-04
Smp_070540.1 SmLINC00265-IBu 0.91 1.86e-06 8.27e-05
Smp_105450.1 SmLINC00265-IBu 0.92 5.42e-07 3.47e-05
Smp_126340.1 SmLINC00265-IBu 0.94 1.83e-07 1.64e-05
Smp_136730.1 SmLINC00265-IBu 0.91 1.42e-06 6.83e-05