Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00264-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:16029023-16053405 - Strand: -


Fig. S5 for SmLINC00264-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00264-IBu 0 1.21 -0.02 0.71 4.93
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC00264-IBu 0.91 2.17e-06 9.21e-05
Smp_007950.1 SmLINC00264-IBu 0.92 6.31e-07 3.86e-05
Smp_070540.1 SmLINC00264-IBu 0.92 6.82e-07 4.08e-05
Smp_105450.1 SmLINC00264-IBu 0.94 7.15e-08 8.61e-06
Smp_105450.2 SmLINC00264-IBu 0.92 7.14e-07 4.21e-05
Smp_123880.1 SmLINC00264-IBu 0.91 1.89e-06 8.36e-05
Smp_126340.1 SmLINC00264-IBu 0.95 3.51e-08 5.31e-06
Smp_131410.1 SmLINC00264-IBu 0.90 2.79e-06 1.00e-04
Smp_136730.1 SmLINC00264-IBu 0.94 8.66e-08 9.81e-06
Smp_137700.1 SmLINC00264-IBu 0.91 1.48e-06 7.06e-05
Smp_137720.1 SmLINC00264-IBu 0.91 1.39e-06 6.73e-05
Smp_139160.1 SmLINC00264-IBu 0.92 8.13e-07 4.61e-05
Smp_139240.1 SmLINC00264-IBu 0.93 3.71e-07 2.67e-05
Smp_162320.1 SmLINC00264-IBu 0.90 3.69e-06 1.00e-04
Smp_163700.1 SmLINC00264-IBu 0.92 5.39e-07 3.46e-05
Smp_181070.1 SmLINC00264-IBu 0.90 3.15e-06 1.00e-04
Smp_187140.1 SmLINC00264-IBu 0.92 1.02e-06 5.41e-05
Smp_194380.1 SmLINC00264-IBu 0.93 4.24e-07 2.93e-05
Smp_194910.1 SmLINC00264-IBu 0.92 1.06e-06 5.57e-05
Smp_205580.1 SmLINC00264-IBu 0.93 4.91e-07 3.24e-05