Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00225-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:14343754-14344533 - Strand: -


Fig. S5 for SmLINC00225-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
SmLINC00225-IBu 0 -1.26 -2.72 -4.38 -4.83
Smp_157140.1 0 9.07 10.07 10.84 11.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 SmLINC00225-IBu 0.90 3.02e-06 1.00e-04
Smp_035090.2 SmLINC00225-IBu 0.92 6.78e-07 4.06e-05
Smp_157140.1 SmLINC00225-IBu -0.94 1.43e-07 1.38e-05