Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00208-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:13073348-13096388 - Strand: +


Fig. S5 for SmLINC00208-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC00208-IBu 0 0.00 1.64 7.32 7.95
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC00208-IBu -0.91 1.28e-06 6.37e-05
Smp_024180.2 SmLINC00208-IBu 0.91 1.27e-06 6.34e-05
Smp_031040.1 SmLINC00208-IBu 0.92 8.60e-07 4.80e-05
Smp_033260.1 SmLINC00208-IBu 0.97 8.15e-10 4.47e-07
Smp_038870.2 SmLINC00208-IBu 0.95 1.60e-08 3.13e-06
Smp_040970.2 SmLINC00208-IBu 0.95 4.09e-08 5.89e-06
Smp_050350.3 SmLINC00208-IBu 0.96 8.13e-09 1.99e-06
Smp_052280.2 SmLINC00208-IBu 0.95 2.67e-08 4.41e-06
Smp_055340.2 SmLINC00208-IBu 0.91 2.45e-06 1.00e-04
Smp_056460.1 SmLINC00208-IBu 0.97 3.32e-10 2.52e-07
Smp_058660.1 SmLINC00208-IBu 0.94 1.14e-07 1.18e-05
Smp_079420.1 SmLINC00208-IBu 0.97 1.57e-09 6.82e-07
Smp_094050.1 SmLINC00208-IBu 0.94 7.10e-08 8.57e-06
Smp_095410.1 SmLINC00208-IBu 0.97 1.93e-10 1.77e-07
Smp_137000.2 SmLINC00208-IBu 0.96 6.08e-09 1.64e-06
Smp_137320.1 SmLINC00208-IBu 0.91 2.22e-06 9.36e-05
Smp_145400.1 SmLINC00208-IBu 0.95 3.17e-08 4.96e-06
Smp_151120.1 SmLINC00208-IBu 0.92 1.08e-06 5.65e-05
Smp_155570.1 SmLINC00208-IBu 0.90 4.75e-06 1.00e-04
Smp_156930.1 SmLINC00208-IBu 0.93 4.46e-07 3.03e-05
Smp_159070.2 SmLINC00208-IBu 0.92 1.15e-06 5.90e-05
Smp_169670.1 SmLINC00208-IBu 0.92 5.49e-07 3.50e-05
Smp_172480.1 SmLINC00208-IBu 0.93 2.88e-07 2.24e-05
Smp_172960.1 SmLINC00208-IBu 0.96 2.51e-09 9.24e-07
Smp_192780.1 SmLINC00208-IBu 0.97 5.49e-10 3.47e-07
Smp_194860.1 SmLINC00208-IBu 0.97 9.09e-10 4.79e-07
Smp_203090.1 SmLINC00208-IBu 0.93 1.99e-07 1.73e-05
Smp_205270.1 SmLINC00208-IBu 0.92 9.37e-07 5.09e-05
Smp_212510.1 SmLINC00208-IBu -0.90 3.03e-06 1.00e-04