Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00192-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:11759995-11766932 - Strand: -


Fig. S5 for SmLINC00192-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_062420.4 0 -0.89 2.10 -11.39 -11.39
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
SmLINC00192-IBu 0 0.61 2.35 -8.28 -4.07
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_138080.1 0 4.97 10.75 -3.79 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC00192-IBu 0.97 2.08e-09 8.17e-07
Smp_032120.1 SmLINC00192-IBu 0.90 3.98e-06 1.00e-04
Smp_042090.3 SmLINC00192-IBu 0.93 4.68e-07 3.13e-05
Smp_062420.4 SmLINC00192-IBu 0.90 4.39e-06 1.00e-04
Smp_063650.3 SmLINC00192-IBu 0.90 3.32e-06 1.00e-04
Smp_085110.3 SmLINC00192-IBu 0.91 1.45e-06 6.95e-05
Smp_098890.1 SmLINC00192-IBu 0.96 1.02e-08 2.32e-06
Smp_138080.1 SmLINC00192-IBu 0.92 9.66e-07 5.21e-05
Smp_159070.3 SmLINC00192-IBu 0.91 1.68e-06 7.71e-05
Smp_194060.1 SmLINC00192-IBu 0.94 1.38e-07 1.34e-05
Smp_200120.1 SmLINC00192-IBu 0.95 3.42e-08 5.22e-06