Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00186-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:11527588-11531012 - Strand: +


Fig. S5 for SmLINC00186-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00186-IBu 0 -0.08 1.30 4.43 6.88
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 SmLINC00186-IBu 0.91 1.41e-06 6.82e-05
Smp_004420.3 SmLINC00186-IBu 0.94 1.92e-07 1.69e-05
Smp_007950.1 SmLINC00186-IBu 0.90 2.94e-06 1.00e-04
Smp_016490.2 SmLINC00186-IBu 0.97 1.88e-09 7.64e-07
Smp_028870.1 SmLINC00186-IBu 0.95 2.85e-08 4.61e-06
Smp_037720.1 SmLINC00186-IBu 0.93 4.68e-07 3.13e-05
Smp_041540.1 SmLINC00186-IBu 0.93 3.51e-07 2.57e-05
Smp_070540.1 SmLINC00186-IBu 0.91 1.53e-06 7.20e-05
Smp_085180.1 SmLINC00186-IBu 0.94 1.10e-07 1.16e-05
Smp_086450.3 SmLINC00186-IBu 0.91 2.44e-06 1.00e-04
Smp_102780.1 SmLINC00186-IBu 0.96 1.32e-08 2.76e-06
Smp_105450.1 SmLINC00186-IBu 0.91 1.22e-06 6.17e-05
Smp_105450.2 SmLINC00186-IBu 0.95 1.75e-08 3.32e-06
Smp_123880.1 SmLINC00186-IBu 0.92 8.46e-07 4.74e-05
Smp_130100.1 SmLINC00186-IBu 0.98 2.07e-11 4.33e-08
Smp_130970.1 SmLINC00186-IBu 0.93 2.99e-07 2.30e-05
Smp_131410.1 SmLINC00186-IBu 0.93 3.46e-07 2.54e-05
Smp_131490.1 SmLINC00186-IBu 0.92 6.25e-07 3.84e-05
Smp_136730.1 SmLINC00186-IBu 0.93 2.34e-07 1.94e-05
Smp_137460.1 SmLINC00186-IBu 0.95 4.25e-08 6.05e-06
Smp_137700.1 SmLINC00186-IBu 0.94 9.85e-08 1.07e-05
Smp_137720.1 SmLINC00186-IBu 0.93 3.42e-07 2.52e-05
Smp_137810.1 SmLINC00186-IBu 0.92 1.09e-06 5.67e-05
Smp_138360.1 SmLINC00186-IBu 0.95 3.42e-08 5.22e-06
Smp_139160.1 SmLINC00186-IBu 0.95 2.63e-08 4.37e-06
Smp_139240.1 SmLINC00186-IBu 0.93 2.16e-07 1.83e-05
Smp_140720.1 SmLINC00186-IBu 0.95 1.92e-08 3.54e-06
Smp_152150.1 SmLINC00186-IBu 0.93 2.23e-07 1.87e-05
Smp_155570.1 SmLINC00186-IBu 0.93 3.44e-07 2.53e-05
Smp_159650.1 SmLINC00186-IBu 0.96 6.78e-09 1.76e-06
Smp_162320.1 SmLINC00186-IBu 0.96 1.22e-08 2.61e-06
Smp_164320.1 SmLINC00186-IBu 0.94 7.89e-08 9.21e-06
Smp_164400.1 SmLINC00186-IBu 0.94 1.08e-07 1.14e-05
Smp_181070.1 SmLINC00186-IBu 0.97 9.36e-10 4.88e-07
Smp_187140.1 SmLINC00186-IBu 0.94 6.51e-08 8.08e-06
Smp_194380.1 SmLINC00186-IBu 0.91 1.75e-06 7.94e-05
Smp_194910.1 SmLINC00186-IBu 0.96 1.28e-08 2.70e-06
Smp_202610.1 SmLINC00186-IBu 0.93 2.26e-07 1.89e-05
Smp_203030.1 SmLINC00186-IBu 0.97 1.99e-10 1.80e-07
Smp_205580.1 SmLINC00186-IBu 0.94 1.41e-07 1.37e-05