Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC00163-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:10084210-10085194 - Strand: +


Fig. S5 for SmLINC00163-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC00163-IBu 0 -4.50 -0.66 3.09 4.09
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_040970.2 0 9.27 9.42 14.46 14.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC00163-IBu 0.92 1.08e-06 5.66e-05
Smp_024180.1 SmLINC00163-IBu 0.91 1.72e-06 7.83e-05
Smp_024180.2 SmLINC00163-IBu 0.92 1.06e-06 5.57e-05
Smp_033260.1 SmLINC00163-IBu 0.93 3.68e-07 2.65e-05
Smp_038870.2 SmLINC00163-IBu 0.90 3.49e-06 1.00e-04
Smp_040970.2 SmLINC00163-IBu 0.93 2.39e-07 1.97e-05
Smp_050350.3 SmLINC00163-IBu 0.95 5.41e-08 7.12e-06
Smp_052280.2 SmLINC00163-IBu 0.94 7.81e-08 9.14e-06
Smp_056460.1 SmLINC00163-IBu 0.92 6.22e-07 3.82e-05
Smp_079420.1 SmLINC00163-IBu 0.92 5.46e-07 3.49e-05
Smp_090140.1 SmLINC00163-IBu 0.93 4.64e-07 3.12e-05
Smp_094050.1 SmLINC00163-IBu 0.97 1.11e-09 5.44e-07
Smp_137000.2 SmLINC00163-IBu 0.90 3.90e-06 1.00e-04